Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18526 | 5' | -55.2 | NC_004681.1 | + | 48652 | 0.66 | 0.799078 |
|
Target: 5'- aGCAGGGCUGggUGCUGccguCGCGCUcgaccgugaaguauUGGc -3' miRNA: 3'- -CGUCCUGAUgaACGACc---GUGCGG--------------ACC- -5' |
|||||||
| 18526 | 5' | -55.2 | NC_004681.1 | + | 5225 | 0.66 | 0.800968 |
|
Target: 5'- uGCAGGACUccuACUacuacgcgcccgcUGUgGGCAUGCaguUGGa -3' miRNA: 3'- -CGUCCUGA---UGA-------------ACGaCCGUGCGg--ACC- -5' |
|||||||
| 18526 | 5' | -55.2 | NC_004681.1 | + | 68502 | 0.66 | 0.801911 |
|
Target: 5'- cGCcacuGAaugGCUcGC-GGCACGCCUGGg -3' miRNA: 3'- -CGuc--CUga-UGAaCGaCCGUGCGGACC- -5' |
|||||||
| 18526 | 5' | -55.2 | NC_004681.1 | + | 20543 | 0.66 | 0.801911 |
|
Target: 5'- gGCGGcGACcacCUUGCugucgaUGGuCGCGCCUGa -3' miRNA: 3'- -CGUC-CUGau-GAACG------ACC-GUGCGGACc -5' |
|||||||
| 18526 | 5' | -55.2 | NC_004681.1 | + | 37192 | 0.66 | 0.811243 |
|
Target: 5'- aCAGGGCUGCgcgUGUggaucGGCugGUucugaggccgCUGGg -3' miRNA: 3'- cGUCCUGAUGa--ACGa----CCGugCG----------GACC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home