miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18527 3' -57.6 NC_004681.1 + 69090 0.67 0.617366
Target:  5'- -aCGCGGGGGAGUgugugGuGUGAAGcGCCg -3'
miRNA:   3'- cgGCGUCUCCUCGa----C-CACUUCcUGGg -5'
18527 3' -57.6 NC_004681.1 + 68799 1.14 0.000418
Target:  5'- gGCCGCAGAGGAGCUGGUGAAGGACCCg -3'
miRNA:   3'- -CGGCGUCUCCUCGACCACUUCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 67467 0.7 0.435793
Target:  5'- aGCCauCAGGGGAGCgcGGUGAgcGGGACg- -3'
miRNA:   3'- -CGGc-GUCUCCUCGa-CCACU--UCCUGgg -5'
18527 3' -57.6 NC_004681.1 + 62523 0.72 0.348989
Target:  5'- gGCgGCGGAGaGGGC-GGUGucGGcGCCCa -3'
miRNA:   3'- -CGgCGUCUC-CUCGaCCACuuCC-UGGG- -5'
18527 3' -57.6 NC_004681.1 + 60123 0.72 0.357095
Target:  5'- aGCCGCcgaAGGcGAGCaGGUGcccaccgggcuuGAGGACCCg -3'
miRNA:   3'- -CGGCG---UCUcCUCGaCCAC------------UUCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 59598 0.68 0.575242
Target:  5'- aGgUGCAGAGGGGUggggGGUuccuuGGAGGAuugcaCCCg -3'
miRNA:   3'- -CgGCGUCUCCUCGa---CCA-----CUUCCU-----GGG- -5'
18527 3' -57.6 NC_004681.1 + 59366 0.67 0.627948
Target:  5'- aCCGUAGAGGAGUUccagcuUGccGGACCUg -3'
miRNA:   3'- cGGCGUCUCCUCGAcc----ACuuCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 59306 0.68 0.533804
Target:  5'- uGCCGUuccGGGGAcucCUGcGUGGccAGGACCCc -3'
miRNA:   3'- -CGGCGu--CUCCUc--GAC-CACU--UCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 57571 0.67 0.596248
Target:  5'- cGCCGUAGAGGAugaGCUcc--AGGGACCg -3'
miRNA:   3'- -CGGCGUCUCCU---CGAccacUUCCUGGg -5'
18527 3' -57.6 NC_004681.1 + 55490 0.66 0.659677
Target:  5'- cGCCcaGCAGuGGAcgacgucgucGCUGGUGcAGGGCaCUu -3'
miRNA:   3'- -CGG--CGUCuCCU----------CGACCACuUCCUG-GG- -5'
18527 3' -57.6 NC_004681.1 + 54936 0.67 0.649112
Target:  5'- gGUCGCAuGAuGAGCUGGUcGAAGGGg-- -3'
miRNA:   3'- -CGGCGU-CUcCUCGACCA-CUUCCUggg -5'
18527 3' -57.6 NC_004681.1 + 54675 0.67 0.606797
Target:  5'- aUUGCGGGGGgcAGCUGGcUGAuGGuuCCCa -3'
miRNA:   3'- cGGCGUCUCC--UCGACC-ACUuCCu-GGG- -5'
18527 3' -57.6 NC_004681.1 + 51481 0.74 0.275234
Target:  5'- uGCUGCAugucGAGGAGCUGG---GGGGCuCCg -3'
miRNA:   3'- -CGGCGU----CUCCUCGACCacuUCCUG-GG- -5'
18527 3' -57.6 NC_004681.1 + 50385 0.66 0.658621
Target:  5'- gGCCGCGG-GGAcguggcccuucuuGC-GGUGGgcgcGGGACCa -3'
miRNA:   3'- -CGGCGUCuCCU-------------CGaCCACU----UCCUGGg -5'
18527 3' -57.6 NC_004681.1 + 48850 0.72 0.325465
Target:  5'- cGCCGUccuGGAGGuGCUGGaccaAGGaGACCCa -3'
miRNA:   3'- -CGGCG---UCUCCuCGACCac--UUC-CUGGG- -5'
18527 3' -57.6 NC_004681.1 + 48501 0.67 0.606797
Target:  5'- cGCCGCGGAgaacccGGAGCgGGUGgcGcACUg -3'
miRNA:   3'- -CGGCGUCU------CCUCGaCCACuuCcUGGg -5'
18527 3' -57.6 NC_004681.1 + 45898 0.68 0.585727
Target:  5'- cCUGCAG-GGAGCUccaugaGGUagucGAuGGACCCu -3'
miRNA:   3'- cGGCGUCuCCUCGA------CCA----CUuCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 44238 0.69 0.503433
Target:  5'- gGCCGguGAGGgccaggcccgcGGCcucgggGGUGAggcAGGugCCu -3'
miRNA:   3'- -CGGCguCUCC-----------UCGa-----CCACU---UCCugGG- -5'
18527 3' -57.6 NC_004681.1 + 43911 0.69 0.523603
Target:  5'- uGCCGUAGcGGGGgUGGgcgcGGACCUc -3'
miRNA:   3'- -CGGCGUCuCCUCgACCacuuCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 41257 0.68 0.554409
Target:  5'- gGCCGCGGAGGuGCUu-----GGACUCa -3'
miRNA:   3'- -CGGCGUCUCCuCGAccacuuCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.