miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18530 5' -61 NC_004681.1 + 70838 0.95 0.003732
Target:  5'- gUCUCCACGCUCAGCGGCCGC-AGCAUg -3'
miRNA:   3'- -AGAGGUGCGAGUCGCCGGCGcUCGUA- -5'
18530 5' -61 NC_004681.1 + 47204 0.76 0.100425
Target:  5'- uUCUCguCGCUCAGCGGCgGCG-GCu- -3'
miRNA:   3'- -AGAGguGCGAGUCGCCGgCGCuCGua -5'
18530 5' -61 NC_004681.1 + 42349 0.75 0.126896
Target:  5'- cUUCCGCgggcgggaccagcaGCUCGGCGGCCGUGuGCGg -3'
miRNA:   3'- aGAGGUG--------------CGAGUCGCCGGCGCuCGUa -5'
18530 5' -61 NC_004681.1 + 38778 0.74 0.138167
Target:  5'- aCUCCugGCUCAuggaacuGCgGGCCGCGcGCAa -3'
miRNA:   3'- aGAGGugCGAGU-------CG-CCGGCGCuCGUa -5'
18530 5' -61 NC_004681.1 + 70941 0.72 0.184692
Target:  5'- ---gCAUGCUC-GCGGCCGCuGAGCGUg -3'
miRNA:   3'- agagGUGCGAGuCGCCGGCG-CUCGUA- -5'
18530 5' -61 NC_004681.1 + 44580 0.72 0.209862
Target:  5'- aUCgccgCCGCGCUC-GCGGCCGCc-GCAc -3'
miRNA:   3'- -AGa---GGUGCGAGuCGCCGGCGcuCGUa -5'
18530 5' -61 NC_004681.1 + 70124 0.7 0.252492
Target:  5'- gCUCCACGCUgAGCuccgagacgcgaaaGCCaGCGGGCAUa -3'
miRNA:   3'- aGAGGUGCGAgUCGc-------------CGG-CGCUCGUA- -5'
18530 5' -61 NC_004681.1 + 10776 0.7 0.262598
Target:  5'- gUCUCC-CGCcuugCAcgcGaCGGCCGCGGGCAc -3'
miRNA:   3'- -AGAGGuGCGa---GU---C-GCCGGCGCUCGUa -5'
18530 5' -61 NC_004681.1 + 61863 0.7 0.281752
Target:  5'- gCUCCugGCcgaUGGCGGCCGCGgucugguGGCGc -3'
miRNA:   3'- aGAGGugCGa--GUCGCCGGCGC-------UCGUa -5'
18530 5' -61 NC_004681.1 + 17800 0.69 0.297009
Target:  5'- --cCCACGCaggccgacaucaacgCGGCGGCCGCGcaaGGCAc -3'
miRNA:   3'- agaGGUGCGa--------------GUCGCCGGCGC---UCGUa -5'
18530 5' -61 NC_004681.1 + 62949 0.69 0.325615
Target:  5'- aUCUCCuucgGCggugguggCGGCGGCggCGCGAGCAg -3'
miRNA:   3'- -AGAGGug--CGa-------GUCGCCG--GCGCUCGUa -5'
18530 5' -61 NC_004681.1 + 47175 0.68 0.34106
Target:  5'- cCUCgACGCcaaGGUGGUgGCGGGCAa -3'
miRNA:   3'- aGAGgUGCGag-UCGCCGgCGCUCGUa -5'
18530 5' -61 NC_004681.1 + 9243 0.68 0.34106
Target:  5'- uUCUCCGCGauCUCcGCGGCgGuCGGGUAc -3'
miRNA:   3'- -AGAGGUGC--GAGuCGCCGgC-GCUCGUa -5'
18530 5' -61 NC_004681.1 + 22271 0.68 0.365206
Target:  5'- aCUCCGCGU--GGCGGC-GUGGGCGc -3'
miRNA:   3'- aGAGGUGCGagUCGCCGgCGCUCGUa -5'
18530 5' -61 NC_004681.1 + 20472 0.68 0.365206
Target:  5'- aCUCCGCuGCgaaAGUGGCC-CGAGUAg -3'
miRNA:   3'- aGAGGUG-CGag-UCGCCGGcGCUCGUa -5'
18530 5' -61 NC_004681.1 + 61758 0.68 0.373513
Target:  5'- cCUCCGCGg-CGGCGGCUucuGCGcGCAg -3'
miRNA:   3'- aGAGGUGCgaGUCGCCGG---CGCuCGUa -5'
18530 5' -61 NC_004681.1 + 17895 0.68 0.381948
Target:  5'- aUUCCugGg-CGGCGGCgGCGAGgGUc -3'
miRNA:   3'- aGAGGugCgaGUCGCCGgCGCUCgUA- -5'
18530 5' -61 NC_004681.1 + 69760 0.67 0.399193
Target:  5'- cCUaCCGCcaaguagguuuGC-CAGCGGCCGCGcGCAc -3'
miRNA:   3'- aGA-GGUG-----------CGaGUCGCCGGCGCuCGUa -5'
18530 5' -61 NC_004681.1 + 33184 0.67 0.416927
Target:  5'- gUUCCACgacauGCUCGGCcuGGCCGUGAaCAUg -3'
miRNA:   3'- aGAGGUG-----CGAGUCG--CCGGCGCUcGUA- -5'
18530 5' -61 NC_004681.1 + 37650 0.67 0.420532
Target:  5'- gCUCCGacuucugcggggccuCGC-CAGCGGCCGCGcGUc- -3'
miRNA:   3'- aGAGGU---------------GCGaGUCGCCGGCGCuCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.