miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18530 5' -61 NC_004681.1 + 9243 0.68 0.34106
Target:  5'- uUCUCCGCGauCUCcGCGGCgGuCGGGUAc -3'
miRNA:   3'- -AGAGGUGC--GAGuCGCCGgC-GCUCGUa -5'
18530 5' -61 NC_004681.1 + 10776 0.7 0.262598
Target:  5'- gUCUCC-CGCcuugCAcgcGaCGGCCGCGGGCAc -3'
miRNA:   3'- -AGAGGuGCGa---GU---C-GCCGGCGCUCGUa -5'
18530 5' -61 NC_004681.1 + 11633 0.67 0.438832
Target:  5'- -aUCCACGCgaagguggacccagUAGCgGGCCGUGuAGCAc -3'
miRNA:   3'- agAGGUGCGa-------------GUCG-CCGGCGC-UCGUa -5'
18530 5' -61 NC_004681.1 + 13227 0.66 0.482572
Target:  5'- --gCCACGaagGGCGGUgGCGGGCAg -3'
miRNA:   3'- agaGGUGCgagUCGCCGgCGCUCGUa -5'
18530 5' -61 NC_004681.1 + 13577 0.66 0.453794
Target:  5'- ---gCGCGCUUcaaGGCCGCGGGCGg -3'
miRNA:   3'- agagGUGCGAGucgCCGGCGCUCGUa -5'
18530 5' -61 NC_004681.1 + 17427 0.66 0.482572
Target:  5'- gUCgCCGCGCUgauccugcgugUAGCGucCCGCGGGCAc -3'
miRNA:   3'- -AGaGGUGCGA-----------GUCGCc-GGCGCUCGUa -5'
18530 5' -61 NC_004681.1 + 17800 0.69 0.297009
Target:  5'- --cCCACGCaggccgacaucaacgCGGCGGCCGCGcaaGGCAc -3'
miRNA:   3'- agaGGUGCGa--------------GUCGCCGGCGC---UCGUa -5'
18530 5' -61 NC_004681.1 + 17895 0.68 0.381948
Target:  5'- aUUCCugGg-CGGCGGCgGCGAGgGUc -3'
miRNA:   3'- aGAGGugCgaGUCGCCGgCGCUCgUA- -5'
18530 5' -61 NC_004681.1 + 18388 0.66 0.492361
Target:  5'- --gCCAgGC--GGCGGCCGCGgcGGCAa -3'
miRNA:   3'- agaGGUgCGagUCGCCGGCGC--UCGUa -5'
18530 5' -61 NC_004681.1 + 20472 0.68 0.365206
Target:  5'- aCUCCGCuGCgaaAGUGGCC-CGAGUAg -3'
miRNA:   3'- aGAGGUG-CGag-UCGCCGGcGCUCGUa -5'
18530 5' -61 NC_004681.1 + 22271 0.68 0.365206
Target:  5'- aCUCCGCGU--GGCGGC-GUGGGCGc -3'
miRNA:   3'- aGAGGUGCGagUCGCCGgCGCUCGUa -5'
18530 5' -61 NC_004681.1 + 22619 0.67 0.434214
Target:  5'- uUCUCCAcggacacCGCgggCAGC-GCCGCGcGCAa -3'
miRNA:   3'- -AGAGGU-------GCGa--GUCGcCGGCGCuCGUa -5'
18530 5' -61 NC_004681.1 + 33184 0.67 0.416927
Target:  5'- gUUCCACgacauGCUCGGCcuGGCCGUGAaCAUg -3'
miRNA:   3'- aGAGGUG-----CGAGUCG--CCGGCGCUcGUA- -5'
18530 5' -61 NC_004681.1 + 36290 0.67 0.425973
Target:  5'- --gCCGagGUUgAGCGGCUGCGGGCGc -3'
miRNA:   3'- agaGGUg-CGAgUCGCCGGCGCUCGUa -5'
18530 5' -61 NC_004681.1 + 37650 0.67 0.420532
Target:  5'- gCUCCGacuucugcggggccuCGC-CAGCGGCCGCGcGUc- -3'
miRNA:   3'- aGAGGU---------------GCGaGUCGCCGGCGCuCGua -5'
18530 5' -61 NC_004681.1 + 38778 0.74 0.138167
Target:  5'- aCUCCugGCUCAuggaacuGCgGGCCGCGcGCAa -3'
miRNA:   3'- aGAGGugCGAGU-------CG-CCGGCGCuCGUa -5'
18530 5' -61 NC_004681.1 + 39700 0.66 0.452851
Target:  5'- aCUCCACGCucaaauUCAGuCGGUCgaauucguccgauGCGAGCu- -3'
miRNA:   3'- aGAGGUGCG------AGUC-GCCGG-------------CGCUCGua -5'
18530 5' -61 NC_004681.1 + 42349 0.75 0.126896
Target:  5'- cUUCCGCgggcgggaccagcaGCUCGGCGGCCGUGuGCGg -3'
miRNA:   3'- aGAGGUG--------------CGAGUCGCCGGCGCuCGUa -5'
18530 5' -61 NC_004681.1 + 44580 0.72 0.209862
Target:  5'- aUCgccgCCGCGCUC-GCGGCCGCc-GCAc -3'
miRNA:   3'- -AGa---GGUGCGAGuCGCCGGCGcuCGUa -5'
18530 5' -61 NC_004681.1 + 44683 0.67 0.435135
Target:  5'- ------aGUgCGGCGGCCGCGAGCGc -3'
miRNA:   3'- agaggugCGaGUCGCCGGCGCUCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.