Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18530 | 5' | -61 | NC_004681.1 | + | 70838 | 0.95 | 0.003732 |
Target: 5'- gUCUCCACGCUCAGCGGCCGC-AGCAUg -3' miRNA: 3'- -AGAGGUGCGAGUCGCCGGCGcUCGUA- -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 22619 | 0.67 | 0.434214 |
Target: 5'- uUCUCCAcggacacCGCgggCAGC-GCCGCGcGCAa -3' miRNA: 3'- -AGAGGU-------GCGa--GUCGcCGGCGCuCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 75486 | 0.66 | 0.44441 |
Target: 5'- aCUaCC-CGCUCAGCaGaCGCGAGCu- -3' miRNA: 3'- aGA-GGuGCGAGUCGcCgGCGCUCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 51727 | 0.66 | 0.44441 |
Target: 5'- --aCCugGUggucgUCGGCGGCCgccccggcGCGGGCAa -3' miRNA: 3'- agaGGugCG-----AGUCGCCGG--------CGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 49335 | 0.66 | 0.44441 |
Target: 5'- gUCcgCCACGg-CGGC-GCCGCGGGCGc -3' miRNA: 3'- -AGa-GGUGCgaGUCGcCGGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 13577 | 0.66 | 0.453794 |
Target: 5'- ---gCGCGCUUcaaGGCCGCGGGCGg -3' miRNA: 3'- agagGUGCGAGucgCCGGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 68872 | 0.66 | 0.47288 |
Target: 5'- --cCCACGCUCuacUGGCCGCG-GCc- -3' miRNA: 3'- agaGGUGCGAGuc-GCCGGCGCuCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 18388 | 0.66 | 0.492361 |
Target: 5'- --gCCAgGC--GGCGGCCGCGgcGGCAa -3' miRNA: 3'- agaGGUgCGagUCGCCGGCGC--UCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 48659 | 0.66 | 0.492361 |
Target: 5'- cCUCCACGCU-GGCGGgaaCCcugGCGGGCc- -3' miRNA: 3'- aGAGGUGCGAgUCGCC---GG---CGCUCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 37650 | 0.67 | 0.420532 |
Target: 5'- gCUCCGacuucugcggggccuCGC-CAGCGGCCGCGcGUc- -3' miRNA: 3'- aGAGGU---------------GCGaGUCGCCGGCGCuCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 33184 | 0.67 | 0.416927 |
Target: 5'- gUUCCACgacauGCUCGGCcuGGCCGUGAaCAUg -3' miRNA: 3'- aGAGGUG-----CGAGUCG--CCGGCGCUcGUA- -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 69760 | 0.67 | 0.399193 |
Target: 5'- cCUaCCGCcaaguagguuuGC-CAGCGGCCGCGcGCAc -3' miRNA: 3'- aGA-GGUG-----------CGaGUCGCCGGCGCuCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 38778 | 0.74 | 0.138167 |
Target: 5'- aCUCCugGCUCAuggaacuGCgGGCCGCGcGCAa -3' miRNA: 3'- aGAGGugCGAGU-------CG-CCGGCGCuCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 44580 | 0.72 | 0.209862 |
Target: 5'- aUCgccgCCGCGCUC-GCGGCCGCc-GCAc -3' miRNA: 3'- -AGa---GGUGCGAGuCGCCGGCGcuCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 17800 | 0.69 | 0.297009 |
Target: 5'- --cCCACGCaggccgacaucaacgCGGCGGCCGCGcaaGGCAc -3' miRNA: 3'- agaGGUGCGa--------------GUCGCCGGCGC---UCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 62949 | 0.69 | 0.325615 |
Target: 5'- aUCUCCuucgGCggugguggCGGCGGCggCGCGAGCAg -3' miRNA: 3'- -AGAGGug--CGa-------GUCGCCG--GCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 47175 | 0.68 | 0.34106 |
Target: 5'- cCUCgACGCcaaGGUGGUgGCGGGCAa -3' miRNA: 3'- aGAGgUGCGag-UCGCCGgCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 20472 | 0.68 | 0.365206 |
Target: 5'- aCUCCGCuGCgaaAGUGGCC-CGAGUAg -3' miRNA: 3'- aGAGGUG-CGag-UCGCCGGcGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 22271 | 0.68 | 0.365206 |
Target: 5'- aCUCCGCGU--GGCGGC-GUGGGCGc -3' miRNA: 3'- aGAGGUGCGagUCGCCGgCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 17895 | 0.68 | 0.381948 |
Target: 5'- aUUCCugGg-CGGCGGCgGCGAGgGUc -3' miRNA: 3'- aGAGGugCgaGUCGCCGgCGCUCgUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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