miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18534 5' -59.2 NC_004681.1 + 73128 1.12 0.000368
Target:  5'- cUCCGCCUCGACAGCCUCAGCCUCAGCg -3'
miRNA:   3'- -AGGCGGAGCUGUCGGAGUCGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 68985 0.8 0.083648
Target:  5'- -gCGCCUCGAUGGCgUCGGCCgCGGCc -3'
miRNA:   3'- agGCGGAGCUGUCGgAGUCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 44995 0.76 0.139727
Target:  5'- cUCgGCCUCGugGGCgUCGcccGCUUCGGCa -3'
miRNA:   3'- -AGgCGGAGCugUCGgAGU---CGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 73412 0.76 0.147324
Target:  5'- cUCCGCCUUGACccaugcuGCCaUCAGUC-CAGCg -3'
miRNA:   3'- -AGGCGGAGCUGu------CGG-AGUCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 70781 0.74 0.198198
Target:  5'- cUCCGCCUCaGCuccguugagucgcauAGCCUCAGCggUAGCg -3'
miRNA:   3'- -AGGCGGAGcUG---------------UCGGAGUCGgaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 17710 0.74 0.201261
Target:  5'- gUUCGCCagUCGACGGCCgCGGUCaagCAGCa -3'
miRNA:   3'- -AGGCGG--AGCUGUCGGaGUCGGa--GUCG- -5'
18534 5' -59.2 NC_004681.1 + 73097 0.74 0.206458
Target:  5'- aCUGCaguUCGACAGCCUCAGCgguCUCuGCn -3'
miRNA:   3'- aGGCGg--AGCUGUCGGAGUCG---GAGuCG- -5'
18534 5' -59.2 NC_004681.1 + 8967 0.74 0.206458
Target:  5'- aCCGCCUCcuCGGCCUCucGCUguUCGGCg -3'
miRNA:   3'- aGGCGGAGcuGUCGGAGu-CGG--AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 14535 0.74 0.206458
Target:  5'- cUCCGCCUCGcggGCGGCgUagauuuucGCCUCGGCc -3'
miRNA:   3'- -AGGCGGAGC---UGUCGgAgu------CGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 30043 0.73 0.240119
Target:  5'- gCCGCC---GCGGCCaUCGGCCUCGGa -3'
miRNA:   3'- aGGCGGagcUGUCGG-AGUCGGAGUCg -5'
18534 5' -59.2 NC_004681.1 + 58259 0.72 0.258606
Target:  5'- aUCCGCCgcaGACcuUCUUGGCCUCAGUc -3'
miRNA:   3'- -AGGCGGag-CUGucGGAGUCGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 39587 0.72 0.27824
Target:  5'- cCCGCCUCG-CuGCCacCGGCCUugagcCAGCg -3'
miRNA:   3'- aGGCGGAGCuGuCGGa-GUCGGA-----GUCG- -5'
18534 5' -59.2 NC_004681.1 + 28144 0.72 0.285043
Target:  5'- aCCGCCUCGACcGCC--AGCgC-CAGCg -3'
miRNA:   3'- aGGCGGAGCUGuCGGagUCG-GaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 45176 0.71 0.291977
Target:  5'- aCCGCggCGAgGGCCUCGaccgcggcggauGCUUCGGCg -3'
miRNA:   3'- aGGCGgaGCUgUCGGAGU------------CGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 65758 0.71 0.303345
Target:  5'- aUCGCUUCGACguccagugguuugaGGCggaguucguccguCUCGGCCUCGGCc -3'
miRNA:   3'- aGGCGGAGCUG--------------UCG-------------GAGUCGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 50655 0.71 0.313569
Target:  5'- uUUCGCCagCcACAGCUUCAGCgcgcgCUCAGCa -3'
miRNA:   3'- -AGGCGGa-GcUGUCGGAGUCG-----GAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 61323 0.7 0.336348
Target:  5'- uUCCGCCacguucUCGGCGGCgUCGcGCCagauggugCAGCg -3'
miRNA:   3'- -AGGCGG------AGCUGUCGgAGU-CGGa-------GUCG- -5'
18534 5' -59.2 NC_004681.1 + 9894 0.7 0.344205
Target:  5'- cUCGuCCUCGAcCAGCUU-GGCUUCAGCc -3'
miRNA:   3'- aGGC-GGAGCU-GUCGGAgUCGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 44677 0.7 0.344205
Target:  5'- cCCuCCUCGACGGCaaCGGCgaCGGCg -3'
miRNA:   3'- aGGcGGAGCUGUCGgaGUCGgaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 70023 0.7 0.344205
Target:  5'- uUCgCGUCUCGGagcuCAGCguggagCUCAGCCcUCAGCg -3'
miRNA:   3'- -AG-GCGGAGCU----GUCG------GAGUCGG-AGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.