miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18534 5' -59.2 NC_004681.1 + 64024 0.68 0.486795
Target:  5'- cUCC-CCU-GACAGCCUCAGuccCCUCugAGUg -3'
miRNA:   3'- -AGGcGGAgCUGUCGGAGUC---GGAG--UCG- -5'
18534 5' -59.2 NC_004681.1 + 7351 0.7 0.360311
Target:  5'- gCCGCCgCGGCgaAGCCUCccgccaAGCCcgCGGCc -3'
miRNA:   3'- aGGCGGaGCUG--UCGGAG------UCGGa-GUCG- -5'
18534 5' -59.2 NC_004681.1 + 39785 0.69 0.394068
Target:  5'- cCCGCCgcgCGACcaucGCCUCccacGCCUCguggGGCa -3'
miRNA:   3'- aGGCGGa--GCUGu---CGGAGu---CGGAG----UCG- -5'
18534 5' -59.2 NC_004681.1 + 32751 0.69 0.411698
Target:  5'- cCCGCCUCGuuCGGCC-CGGUC--GGCa -3'
miRNA:   3'- aGGCGGAGCu-GUCGGaGUCGGagUCG- -5'
18534 5' -59.2 NC_004681.1 + 9517 0.69 0.429808
Target:  5'- -gCGCCUCGGCcugcuGGuguaccgccCCUCGGCCUucCAGCu -3'
miRNA:   3'- agGCGGAGCUG-----UC---------GGAGUCGGA--GUCG- -5'
18534 5' -59.2 NC_004681.1 + 69116 0.68 0.457828
Target:  5'- gCCGCCUCGcCcgcgcccuGGCCUCccucGCCUacCGGCu -3'
miRNA:   3'- aGGCGGAGCuG--------UCGGAGu---CGGA--GUCG- -5'
18534 5' -59.2 NC_004681.1 + 14719 0.68 0.467383
Target:  5'- aCCGCCUCGGaguugcaggaAGCCUCguacacGGUCUCgaaGGCc -3'
miRNA:   3'- aGGCGGAGCUg---------UCGGAG------UCGGAG---UCG- -5'
18534 5' -59.2 NC_004681.1 + 13404 0.68 0.47704
Target:  5'- aCCGCggCGACGGCCUgGaCCgugagCAGCu -3'
miRNA:   3'- aGGCGgaGCUGUCGGAgUcGGa----GUCG- -5'
18534 5' -59.2 NC_004681.1 + 51066 0.68 0.47704
Target:  5'- aCCuCCUCGACGGCCUgAGagaaguCCagAGCg -3'
miRNA:   3'- aGGcGGAGCUGUCGGAgUC------GGagUCG- -5'
18534 5' -59.2 NC_004681.1 + 5807 0.7 0.346587
Target:  5'- gCCGCCccaaccugguacugCGGCAcgagaagcGCCUCAGCCccgaggcUCAGCa -3'
miRNA:   3'- aGGCGGa-------------GCUGU--------CGGAGUCGG-------AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 44677 0.7 0.344205
Target:  5'- cCCuCCUCGACGGCaaCGGCgaCGGCg -3'
miRNA:   3'- aGGcGGAGCUGUCGgaGUCGgaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 70023 0.7 0.344205
Target:  5'- uUCgCGUCUCGGagcuCAGCguggagCUCAGCCcUCAGCg -3'
miRNA:   3'- -AG-GCGGAGCU----GUCG------GAGUCGG-AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 44995 0.76 0.139727
Target:  5'- cUCgGCCUCGugGGCgUCGcccGCUUCGGCa -3'
miRNA:   3'- -AGgCGGAGCugUCGgAGU---CGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 73412 0.76 0.147324
Target:  5'- cUCCGCCUUGACccaugcuGCCaUCAGUC-CAGCg -3'
miRNA:   3'- -AGGCGGAGCUGu------CGG-AGUCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 70781 0.74 0.198198
Target:  5'- cUCCGCCUCaGCuccguugagucgcauAGCCUCAGCggUAGCg -3'
miRNA:   3'- -AGGCGGAGcUG---------------UCGGAGUCGgaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 17710 0.74 0.201261
Target:  5'- gUUCGCCagUCGACGGCCgCGGUCaagCAGCa -3'
miRNA:   3'- -AGGCGG--AGCUGUCGGaGUCGGa--GUCG- -5'
18534 5' -59.2 NC_004681.1 + 73097 0.74 0.206458
Target:  5'- aCUGCaguUCGACAGCCUCAGCgguCUCuGCn -3'
miRNA:   3'- aGGCGg--AGCUGUCGGAGUCG---GAGuCG- -5'
18534 5' -59.2 NC_004681.1 + 8967 0.74 0.206458
Target:  5'- aCCGCCUCcuCGGCCUCucGCUguUCGGCg -3'
miRNA:   3'- aGGCGGAGcuGUCGGAGu-CGG--AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 30043 0.73 0.240119
Target:  5'- gCCGCC---GCGGCCaUCGGCCUCGGa -3'
miRNA:   3'- aGGCGGagcUGUCGG-AGUCGGAGUCg -5'
18534 5' -59.2 NC_004681.1 + 65758 0.71 0.303345
Target:  5'- aUCGCUUCGACguccagugguuugaGGCggaguucguccguCUCGGCCUCGGCc -3'
miRNA:   3'- aGGCGGAGCUG--------------UCG-------------GAGUCGGAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.