miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18534 5' -59.2 NC_004681.1 + 1227 0.68 0.438108
Target:  5'- cUCCcCCUCG-CGGCCUUcguagauGGCCUUgaGGCg -3'
miRNA:   3'- -AGGcGGAGCuGUCGGAG-------UCGGAG--UCG- -5'
18534 5' -59.2 NC_004681.1 + 3074 0.66 0.557416
Target:  5'- gCUGCCUCGAUGGCCgcgaauaucUCGGgguCCUC-GCu -3'
miRNA:   3'- aGGCGGAGCUGUCGG---------AGUC---GGAGuCG- -5'
18534 5' -59.2 NC_004681.1 + 5300 0.66 0.58862
Target:  5'- aUCUGUggCGACAG-CUCGGCCaUGGCg -3'
miRNA:   3'- -AGGCGgaGCUGUCgGAGUCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 5807 0.7 0.346587
Target:  5'- gCCGCCccaaccugguacugCGGCAcgagaagcGCCUCAGCCccgaggcUCAGCa -3'
miRNA:   3'- aGGCGGa-------------GCUGU--------CGGAGUCGG-------AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 6498 0.67 0.516602
Target:  5'- gUCGCUUCGGC-GCCggGGCCUCcucccccucgacAGCg -3'
miRNA:   3'- aGGCGGAGCUGuCGGagUCGGAG------------UCG- -5'
18534 5' -59.2 NC_004681.1 + 6814 0.66 0.599098
Target:  5'- cCCGUCgauggaccgUGACGGCgaCAGCCUgaAGCg -3'
miRNA:   3'- aGGCGGa--------GCUGUCGgaGUCGGAg-UCG- -5'
18534 5' -59.2 NC_004681.1 + 7351 0.7 0.360311
Target:  5'- gCCGCCgCGGCgaAGCCUCccgccaAGCCcgCGGCc -3'
miRNA:   3'- aGGCGGaGCUG--UCGGAG------UCGGa-GUCG- -5'
18534 5' -59.2 NC_004681.1 + 7440 0.66 0.578175
Target:  5'- cUUCGCCgCGGCGGCggggUCAGCCcCGGg -3'
miRNA:   3'- -AGGCGGaGCUGUCGg---AGUCGGaGUCg -5'
18534 5' -59.2 NC_004681.1 + 8007 0.69 0.420694
Target:  5'- uUCCGgcuCCUCGGCGGCUUCcucggaGGCggCGGCg -3'
miRNA:   3'- -AGGC---GGAGCUGUCGGAG------UCGgaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 8331 0.67 0.536875
Target:  5'- -gCGCCUCGACcucGGCCUggugGGCCUUgaAGUc -3'
miRNA:   3'- agGCGGAGCUG---UCGGAg---UCGGAG--UCG- -5'
18534 5' -59.2 NC_004681.1 + 8390 0.68 0.467383
Target:  5'- gCCGuCCUUGGCGGCgUCcgcgccaccgaGGCUcuUCAGCa -3'
miRNA:   3'- aGGC-GGAGCUGUCGgAG-----------UCGG--AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 8526 0.67 0.536875
Target:  5'- aCCGCCcCcGCGGCCaUCGGCCagaaccccuUCGGUu -3'
miRNA:   3'- aGGCGGaGcUGUCGG-AGUCGG---------AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 8967 0.74 0.206458
Target:  5'- aCCGCCUCcuCGGCCUCucGCUguUCGGCg -3'
miRNA:   3'- aGGCGGAGcuGUCGGAGu-CGG--AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 9517 0.69 0.429808
Target:  5'- -gCGCCUCGGCcugcuGGuguaccgccCCUCGGCCUucCAGCu -3'
miRNA:   3'- agGCGGAGCUG-----UC---------GGAGUCGGA--GUCG- -5'
18534 5' -59.2 NC_004681.1 + 9894 0.7 0.344205
Target:  5'- cUCGuCCUCGAcCAGCUU-GGCUUCAGCc -3'
miRNA:   3'- aGGC-GGAGCU-GUCGGAgUCGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 10374 0.67 0.526702
Target:  5'- gCCGCUUCGGCAGUgUC-GCU--GGCa -3'
miRNA:   3'- aGGCGGAGCUGUCGgAGuCGGagUCG- -5'
18534 5' -59.2 NC_004681.1 + 10772 0.67 0.526702
Target:  5'- cCCGCCUugcacgCGACGGCCgcgggCAccgggggcGCCaggCAGCg -3'
miRNA:   3'- aGGCGGA------GCUGUCGGa----GU--------CGGa--GUCG- -5'
18534 5' -59.2 NC_004681.1 + 11479 0.66 0.58862
Target:  5'- aUCCGCUcguggacuUCGuCAGCCaggucgcCAGCCUCAu- -3'
miRNA:   3'- -AGGCGG--------AGCuGUCGGa------GUCGGAGUcg -5'
18534 5' -59.2 NC_004681.1 + 12367 0.66 0.58862
Target:  5'- aCCGUCUCG-CAGaCCUCGGguggcaccaccaCCgCGGCg -3'
miRNA:   3'- aGGCGGAGCuGUC-GGAGUC------------GGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 13404 0.68 0.47704
Target:  5'- aCCGCggCGACGGCCUgGaCCgugagCAGCu -3'
miRNA:   3'- aGGCGgaGCUGUCGGAgUcGGa----GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.