Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18536 | 3' | -56 | NC_004681.1 | + | 12180 | 0.66 | 0.749115 |
Target: 5'- uGGCGuCUaCCCGGACCCgGCGUCGGGc- -3' miRNA: 3'- -UCGC-GA-GGGUUUGGGaCGUGGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 16231 | 0.66 | 0.749115 |
Target: 5'- cGGCGgaaaUCCCAacGACCCgaacaaGCACCGcgaguacacGGUGg -3' miRNA: 3'- -UCGCg---AGGGU--UUGGGa-----CGUGGU---------UCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 22407 | 0.66 | 0.728404 |
Target: 5'- gGGgGCUUaCCGGgcucACCCUGCGCCAu--- -3' miRNA: 3'- -UCgCGAG-GGUU----UGGGACGUGGUucac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 3153 | 0.66 | 0.717902 |
Target: 5'- uGCGCaggacugccaCCAGGCCCUugGCGCCGcgGGUGc -3' miRNA: 3'- uCGCGag--------GGUUUGGGA--CGUGGU--UCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 48212 | 0.66 | 0.717902 |
Target: 5'- aAGCGCgCCUAcaagcuGGCCCU-CGCCGAGg- -3' miRNA: 3'- -UCGCGaGGGU------UUGGGAcGUGGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 7490 | 0.66 | 0.707317 |
Target: 5'- cGGaCGCUCCgguCGAugCCUGgGCCuGGGUGc -3' miRNA: 3'- -UC-GCGAGG---GUUugGGACgUGG-UUCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 51849 | 0.66 | 0.696661 |
Target: 5'- cGGCGUUaCUCuuGCCC-GCGCCGGGg- -3' miRNA: 3'- -UCGCGA-GGGuuUGGGaCGUGGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 19023 | 0.66 | 0.695592 |
Target: 5'- uGCGCUCCCGcgacgggAGCCUgggGaccgGCCAGGUa -3' miRNA: 3'- uCGCGAGGGU-------UUGGGa--Cg---UGGUUCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 31481 | 0.67 | 0.675177 |
Target: 5'- cGCGC-CCCGuAGCCCU-CACCGuucGUGu -3' miRNA: 3'- uCGCGaGGGU-UUGGGAcGUGGUu--CAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 71417 | 0.67 | 0.66437 |
Target: 5'- -aCGgUCCCAGaAUCCUGCACCAu--- -3' miRNA: 3'- ucGCgAGGGUU-UGGGACGUGGUucac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 4067 | 0.67 | 0.66437 |
Target: 5'- gAGUGCUggcCCCAcgccAACCCcGCGCUggGUc -3' miRNA: 3'- -UCGCGA---GGGU----UUGGGaCGUGGuuCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 36105 | 0.67 | 0.639419 |
Target: 5'- cGUGCUCCCAucgaaugcgcgggcAAUCUUGCGCCGc--- -3' miRNA: 3'- uCGCGAGGGU--------------UUGGGACGUGGUucac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 47625 | 0.68 | 0.610093 |
Target: 5'- cAGCGCaCCCAGccaucggucacGCCCUGcUugUAGGUGu -3' miRNA: 3'- -UCGCGaGGGUU-----------UGGGAC-GugGUUCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 50657 | 0.68 | 0.610093 |
Target: 5'- aAGCGCUgCgAGACgCCUaccGCACCGGGg- -3' miRNA: 3'- -UCGCGAgGgUUUG-GGA---CGUGGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 18199 | 0.68 | 0.588447 |
Target: 5'- gAGCGcCUCCCGGcgcACCCccgggUGUACCGGGc- -3' miRNA: 3'- -UCGC-GAGGGUU---UGGG-----ACGUGGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 5918 | 0.68 | 0.588447 |
Target: 5'- aGGCGCUUCUcGugCCgcaGUACCAGGUu -3' miRNA: 3'- -UCGCGAGGGuUugGGa--CGUGGUUCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 53312 | 0.68 | 0.588447 |
Target: 5'- uGCGCUUCCGggUCCUggaGCACUAcaAGUa -3' miRNA: 3'- uCGCGAGGGUuuGGGA---CGUGGU--UCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 3026 | 0.69 | 0.566944 |
Target: 5'- cAGCgGCaaugCCCGcACCCgcgGCGCCAAGg- -3' miRNA: 3'- -UCG-CGa---GGGUuUGGGa--CGUGGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 19216 | 0.69 | 0.545647 |
Target: 5'- aGGCGUccaCCCAgcugcgAACCUcGCGCCGGGUGu -3' miRNA: 3'- -UCGCGa--GGGU------UUGGGaCGUGGUUCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 53411 | 0.69 | 0.545647 |
Target: 5'- uAGUGCUCCaGGACCCggaagcGCACCcAGUu -3' miRNA: 3'- -UCGCGAGGgUUUGGGa-----CGUGGuUCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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