Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18536 | 5' | -59.1 | NC_004681.1 | + | 75319 | 1.09 | 0.000602 |
Target: 5'- aGCCACCAGACGUGGCCUCUGCGCACGc -3' miRNA: 3'- -CGGUGGUCUGCACCGGAGACGCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 6462 | 0.78 | 0.108017 |
Target: 5'- cGCCAUCGGGCGUGGCgCccaagggCUGCaGCGCGg -3' miRNA: 3'- -CGGUGGUCUGCACCG-Ga------GACG-CGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 61760 | 0.76 | 0.156665 |
Target: 5'- gGCCuCCGcGGCGgcGGCUUCUGCGCGCa -3' miRNA: 3'- -CGGuGGU-CUGCa-CCGGAGACGCGUGc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 26284 | 0.76 | 0.165056 |
Target: 5'- aCCACCGagacucauccGACGUGGCCgcaCUGCGC-CGg -3' miRNA: 3'- cGGUGGU----------CUGCACCGGa--GACGCGuGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 14316 | 0.73 | 0.260203 |
Target: 5'- gGUCGCCgAGGCGcgGGCCaaugagCUGCGCGCc -3' miRNA: 3'- -CGGUGG-UCUGCa-CCGGa-----GACGCGUGc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 14452 | 0.72 | 0.266624 |
Target: 5'- uGCgGgCGGAgGUGGCCUCgauguucuugGCGCGCa -3' miRNA: 3'- -CGgUgGUCUgCACCGGAGa---------CGCGUGc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 58769 | 0.72 | 0.266624 |
Target: 5'- cGCCAUCAGGCagguGUGGCCcgCgGCGCAgGc -3' miRNA: 3'- -CGGUGGUCUG----CACCGGa-GaCGCGUgC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 15756 | 0.72 | 0.279849 |
Target: 5'- cGCCGuuGGcgucuGCGUGaGCCUC-GCGCGCGg -3' miRNA: 3'- -CGGUggUC-----UGCAC-CGGAGaCGCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 15976 | 0.72 | 0.293591 |
Target: 5'- cGCCAuccccgcgguCCAGAUGcUGGCCUCcGCGUAUc -3' miRNA: 3'- -CGGU----------GGUCUGC-ACCGGAGaCGCGUGc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 8233 | 0.71 | 0.330228 |
Target: 5'- cCCACCAGGCcgaGGUCgagGCGCACGa -3' miRNA: 3'- cGGUGGUCUGca-CCGGagaCGCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 50385 | 0.7 | 0.378492 |
Target: 5'- gGCCGCgGGgACGUGGCCcuUCuUGCgguggGCGCGg -3' miRNA: 3'- -CGGUGgUC-UGCACCGG--AG-ACG-----CGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 17635 | 0.7 | 0.386983 |
Target: 5'- uGCCGCCAGggaGCGUGGCCU----GCAUGu -3' miRNA: 3'- -CGGUGGUC---UGCACCGGAgacgCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 31403 | 0.7 | 0.386983 |
Target: 5'- aCCACCAGGCGaaugccuucgGGCUUCUGCGg--- -3' miRNA: 3'- cGGUGGUCUGCa---------CCGGAGACGCgugc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 69620 | 0.7 | 0.390415 |
Target: 5'- gGCCGCCGcagcagugagcacacGGCGUGGCgcacCUC-GCGCACc -3' miRNA: 3'- -CGGUGGU---------------CUGCACCG----GAGaCGCGUGc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 38918 | 0.7 | 0.395599 |
Target: 5'- uGCCGCCguAGGCccggaUGGUCUCggcggacuUGCGCGCGg -3' miRNA: 3'- -CGGUGG--UCUGc----ACCGGAG--------ACGCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 54331 | 0.69 | 0.404338 |
Target: 5'- cGCCACCcaccUGUGGCCUaaguacCUGCGCAa- -3' miRNA: 3'- -CGGUGGucu-GCACCGGA------GACGCGUgc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 5444 | 0.69 | 0.404338 |
Target: 5'- uUCACCgggAGGCGUGccagcGCCUgUGCGCGCu -3' miRNA: 3'- cGGUGG---UCUGCAC-----CGGAgACGCGUGc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 40391 | 0.69 | 0.407867 |
Target: 5'- aCCGCCAG-CGUGGCCggugucUCcacccagaguuugaaUGCGCGCu -3' miRNA: 3'- cGGUGGUCuGCACCGG------AG---------------ACGCGUGc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 52952 | 0.69 | 0.422175 |
Target: 5'- cGUCACC-GACGUGGCCUg-GCagGCugGc -3' miRNA: 3'- -CGGUGGuCUGCACCGGAgaCG--CGugC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 41070 | 0.69 | 0.43127 |
Target: 5'- cGCCGCCGccGAUGUGcucaccgaacGCCUCaGCGUugGu -3' miRNA: 3'- -CGGUGGU--CUGCAC----------CGGAGaCGCGugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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