Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18536 | 5' | -59.1 | NC_004681.1 | + | 5444 | 0.69 | 0.404338 |
Target: 5'- uUCACCgggAGGCGUGccagcGCCUgUGCGCGCu -3' miRNA: 3'- cGGUGG---UCUGCAC-----CGGAgACGCGUGc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 5778 | 0.67 | 0.518832 |
Target: 5'- cGCCACCGcGGCGauguggaagaacgcUGGCCgccccaaccugguaCUGCgGCACGa -3' miRNA: 3'- -CGGUGGU-CUGC--------------ACCGGa-------------GACG-CGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 6462 | 0.78 | 0.108017 |
Target: 5'- cGCCAUCGGGCGUGGCgCccaagggCUGCaGCGCGg -3' miRNA: 3'- -CGGUGGUCUGCACCG-Ga------GACG-CGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 8233 | 0.71 | 0.330228 |
Target: 5'- cCCACCAGGCcgaGGUCgagGCGCACGa -3' miRNA: 3'- cGGUGGUCUGca-CCGGagaCGCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 8997 | 0.68 | 0.488112 |
Target: 5'- cGCCGCCAGccaggaGC-UGGaCCUCuuccuUGCGCugGa -3' miRNA: 3'- -CGGUGGUC------UGcACC-GGAG-----ACGCGugC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 9609 | 0.66 | 0.58959 |
Target: 5'- aCCAgCAGGCcgaGGCgCUCUucggcGCGCACGg -3' miRNA: 3'- cGGUgGUCUGca-CCG-GAGA-----CGCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 13676 | 0.68 | 0.497932 |
Target: 5'- gGCCGCC---CGcGGCCUUgaaGCGCGCGu -3' miRNA: 3'- -CGGUGGucuGCaCCGGAGa--CGCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 14316 | 0.73 | 0.260203 |
Target: 5'- gGUCGCCgAGGCGcgGGCCaaugagCUGCGCGCc -3' miRNA: 3'- -CGGUGG-UCUGCa-CCGGa-----GACGCGUGc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 14452 | 0.72 | 0.266624 |
Target: 5'- uGCgGgCGGAgGUGGCCUCgauguucuugGCGCGCa -3' miRNA: 3'- -CGgUgGUCUgCACCGGAGa---------CGCGUGc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 14475 | 0.66 | 0.58959 |
Target: 5'- cGCCGCCuccgccgagcaGGGCGcgcuggUGGCCggugCUG-GCGCGa -3' miRNA: 3'- -CGGUGG-----------UCUGC------ACCGGa---GACgCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 15756 | 0.72 | 0.279849 |
Target: 5'- cGCCGuuGGcgucuGCGUGaGCCUC-GCGCGCGg -3' miRNA: 3'- -CGGUggUC-----UGCAC-CGGAGaCGCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 15976 | 0.72 | 0.293591 |
Target: 5'- cGCCAuccccgcgguCCAGAUGcUGGCCUCcGCGUAUc -3' miRNA: 3'- -CGGU----------GGUCUGC-ACCGGAGaCGCGUGc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 16114 | 0.67 | 0.517828 |
Target: 5'- aGCCGCCAcGGCuGUgucggguaucGGCUUCgcgGCGCugGc -3' miRNA: 3'- -CGGUGGU-CUG-CA----------CCGGAGa--CGCGugC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 16209 | 0.68 | 0.488112 |
Target: 5'- cCCGacaCAGcCGUGGCggCUGUGCGCGc -3' miRNA: 3'- cGGUg--GUCuGCACCGgaGACGCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 16312 | 0.69 | 0.449797 |
Target: 5'- uCCGCCgaAGGCGUGGCCguUCUGC-UugGc -3' miRNA: 3'- cGGUGG--UCUGCACCGG--AGACGcGugC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 17635 | 0.7 | 0.386983 |
Target: 5'- uGCCGCCAGggaGCGUGGCCU----GCAUGu -3' miRNA: 3'- -CGGUGGUC---UGCACCGGAgacgCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 26284 | 0.76 | 0.165056 |
Target: 5'- aCCACCGagacucauccGACGUGGCCgcaCUGCGC-CGg -3' miRNA: 3'- cGGUGGU----------CUGCACCGGa--GACGCGuGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 26453 | 0.67 | 0.558502 |
Target: 5'- cGCCGCCAGAguaCGgcuacGGCCUggcCUG-GUACGa -3' miRNA: 3'- -CGGUGGUCU---GCa----CCGGA---GACgCGUGC- -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 31403 | 0.7 | 0.386983 |
Target: 5'- aCCACCAGGCGaaugccuucgGGCUUCUGCGg--- -3' miRNA: 3'- cGGUGGUCUGCa---------CCGGAGACGCgugc -5' |
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18536 | 5' | -59.1 | NC_004681.1 | + | 36136 | 0.66 | 0.620968 |
Target: 5'- cGCCGCCAcuucuCGUcuucGGUUUCgGCGCACa -3' miRNA: 3'- -CGGUGGUcu---GCA----CCGGAGaCGCGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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