miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18536 5' -59.1 NC_004681.1 + 75319 1.09 0.000602
Target:  5'- aGCCACCAGACGUGGCCUCUGCGCACGc -3'
miRNA:   3'- -CGGUGGUCUGCACCGGAGACGCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 36136 0.66 0.620968
Target:  5'- cGCCGCCAcuucuCGUcuucGGUUUCgGCGCACa -3'
miRNA:   3'- -CGGUGGUcu---GCA----CCGGAGaCGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 14475 0.66 0.58959
Target:  5'- cGCCGCCuccgccgagcaGGGCGcgcuggUGGCCggugCUG-GCGCGa -3'
miRNA:   3'- -CGGUGG-----------UCUGC------ACCGGa---GACgCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 26453 0.67 0.558502
Target:  5'- cGCCGCCAGAguaCGgcuacGGCCUggcCUG-GUACGa -3'
miRNA:   3'- -CGGUGGUCU---GCa----CCGGA---GACgCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 5778 0.67 0.518832
Target:  5'- cGCCACCGcGGCGauguggaagaacgcUGGCCgccccaaccugguaCUGCgGCACGa -3'
miRNA:   3'- -CGGUGGU-CUGC--------------ACCGGa-------------GACG-CGUGC- -5'
18536 5' -59.1 NC_004681.1 + 16114 0.67 0.517828
Target:  5'- aGCCGCCAcGGCuGUgucggguaucGGCUUCgcgGCGCugGc -3'
miRNA:   3'- -CGGUGGU-CUG-CA----------CCGGAGa--CGCGugC- -5'
18536 5' -59.1 NC_004681.1 + 41070 0.69 0.43127
Target:  5'- cGCCGCCGccGAUGUGcucaccgaacGCCUCaGCGUugGu -3'
miRNA:   3'- -CGGUGGU--CUGCAC----------CGGAGaCGCGugC- -5'
18536 5' -59.1 NC_004681.1 + 52952 0.69 0.422175
Target:  5'- cGUCACC-GACGUGGCCUg-GCagGCugGc -3'
miRNA:   3'- -CGGUGGuCUGCACCGGAgaCG--CGugC- -5'
18536 5' -59.1 NC_004681.1 + 40391 0.69 0.407867
Target:  5'- aCCGCCAG-CGUGGCCggugucUCcacccagaguuugaaUGCGCGCu -3'
miRNA:   3'- cGGUGGUCuGCACCGG------AG---------------ACGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 54331 0.69 0.404338
Target:  5'- cGCCACCcaccUGUGGCCUaaguacCUGCGCAa- -3'
miRNA:   3'- -CGGUGGucu-GCACCGGA------GACGCGUgc -5'
18536 5' -59.1 NC_004681.1 + 8233 0.71 0.330228
Target:  5'- cCCACCAGGCcgaGGUCgagGCGCACGa -3'
miRNA:   3'- cGGUGGUCUGca-CCGGagaCGCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 15976 0.72 0.293591
Target:  5'- cGCCAuccccgcgguCCAGAUGcUGGCCUCcGCGUAUc -3'
miRNA:   3'- -CGGU----------GGUCUGC-ACCGGAGaCGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 14316 0.73 0.260203
Target:  5'- gGUCGCCgAGGCGcgGGCCaaugagCUGCGCGCc -3'
miRNA:   3'- -CGGUGG-UCUGCa-CCGGa-----GACGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 26284 0.76 0.165056
Target:  5'- aCCACCGagacucauccGACGUGGCCgcaCUGCGC-CGg -3'
miRNA:   3'- cGGUGGU----------CUGCACCGGa--GACGCGuGC- -5'
18536 5' -59.1 NC_004681.1 + 50385 0.7 0.378492
Target:  5'- gGCCGCgGGgACGUGGCCcuUCuUGCgguggGCGCGg -3'
miRNA:   3'- -CGGUGgUC-UGCACCGG--AG-ACG-----CGUGC- -5'
18536 5' -59.1 NC_004681.1 + 15756 0.72 0.279849
Target:  5'- cGCCGuuGGcgucuGCGUGaGCCUC-GCGCGCGg -3'
miRNA:   3'- -CGGUggUC-----UGCAC-CGGAGaCGCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 58769 0.72 0.266624
Target:  5'- cGCCAUCAGGCagguGUGGCCcgCgGCGCAgGc -3'
miRNA:   3'- -CGGUGGUCUG----CACCGGa-GaCGCGUgC- -5'
18536 5' -59.1 NC_004681.1 + 14452 0.72 0.266624
Target:  5'- uGCgGgCGGAgGUGGCCUCgauguucuugGCGCGCa -3'
miRNA:   3'- -CGgUgGUCUgCACCGGAGa---------CGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 61760 0.76 0.156665
Target:  5'- gGCCuCCGcGGCGgcGGCUUCUGCGCGCa -3'
miRNA:   3'- -CGGuGGU-CUGCa-CCGGAGACGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 44817 0.66 0.610489
Target:  5'- cGCCGCaGGugGUGGUgaCgcgcuugGUGCGCGu -3'
miRNA:   3'- -CGGUGgUCugCACCGgaGa------CGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.