miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18538 3' -52.5 NC_004681.1 + 75577 1.11 0.001777
Target:  5'- cGCACACACAGCACGCACACAAUCCCAu -3'
miRNA:   3'- -CGUGUGUGUCGUGCGUGUGUUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 74512 0.73 0.517586
Target:  5'- cGCGCACGCcagAGCGUGCGCACAGUgCgCAa -3'
miRNA:   3'- -CGUGUGUG---UCGUGCGUGUGUUAgG-GU- -5'
18538 3' -52.5 NC_004681.1 + 74145 0.66 0.891208
Target:  5'- --uUACugGGUACGCGCACGGagcgCUCAg -3'
miRNA:   3'- cguGUGugUCGUGCGUGUGUUa---GGGU- -5'
18538 3' -52.5 NC_004681.1 + 73175 0.68 0.796772
Target:  5'- gGCACuC-CAGC-CGCGCACc-UCCCGg -3'
miRNA:   3'- -CGUGuGuGUCGuGCGUGUGuuAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 73097 0.74 0.455881
Target:  5'- -uGCGCAgAGCACGCGC-CAAUCgCCu -3'
miRNA:   3'- cgUGUGUgUCGUGCGUGuGUUAG-GGu -5'
18538 3' -52.5 NC_004681.1 + 71570 0.67 0.851708
Target:  5'- cGCGCGgACGGC-CGCaACGUAGUCCUc -3'
miRNA:   3'- -CGUGUgUGUCGuGCG-UGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 70502 0.73 0.526075
Target:  5'- cGCGCGCGCguggcaauccgaaAGCGCGCgugacaaucuaccGCGCGGUUCCAc -3'
miRNA:   3'- -CGUGUGUG-------------UCGUGCG-------------UGUGUUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 70200 0.66 0.891208
Target:  5'- -aACGCAUGGCccgugUGCGCGCGGUCUCu -3'
miRNA:   3'- cgUGUGUGUCGu----GCGUGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 69872 0.75 0.44598
Target:  5'- cGUGCGCGCGGC-CGCugGCAAaCCUAc -3'
miRNA:   3'- -CGUGUGUGUCGuGCGugUGUUaGGGU- -5'
18538 3' -52.5 NC_004681.1 + 69604 0.66 0.911769
Target:  5'- -aGCACACGGCgugGCGCACcuCGcgCaCCAg -3'
miRNA:   3'- cgUGUGUGUCG---UGCGUGu-GUuaG-GGU- -5'
18538 3' -52.5 NC_004681.1 + 68574 0.69 0.746132
Target:  5'- gGCACGCcuggagcgACAGCGgGC-CAUAGUCCUc -3'
miRNA:   3'- -CGUGUG--------UGUCGUgCGuGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 67594 0.66 0.911769
Target:  5'- --uCGCGCAGCAggcCGUACAgAaucGUCCCGc -3'
miRNA:   3'- cguGUGUGUCGU---GCGUGUgU---UAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 64946 0.66 0.897633
Target:  5'- aGCugGgugagguCGCGGCGCagGUAC-CAGUCCCAc -3'
miRNA:   3'- -CGugU-------GUGUCGUG--CGUGuGUUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 57891 0.68 0.815891
Target:  5'- gGCG-GCGCGGCGCGUgguCGCGGUCuCCGg -3'
miRNA:   3'- -CGUgUGUGUCGUGCGu--GUGUUAG-GGU- -5'
18538 3' -52.5 NC_004681.1 + 57678 0.69 0.766819
Target:  5'- --cCGCGCAGCGCuCgACGCAAUCCUc -3'
miRNA:   3'- cguGUGUGUCGUGcG-UGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 57498 0.66 0.898333
Target:  5'- aGCAuCGCGgAGCGCGCugAgAuguUCCUg -3'
miRNA:   3'- -CGU-GUGUgUCGUGCGugUgUu--AGGGu -5'
18538 3' -52.5 NC_004681.1 + 55912 0.69 0.75654
Target:  5'- cGC-CGCGCAGguCGUGCGCGugCCCGc -3'
miRNA:   3'- -CGuGUGUGUCguGCGUGUGUuaGGGU- -5'
18538 3' -52.5 NC_004681.1 + 52101 0.67 0.843081
Target:  5'- aGCGCACcaACAuuGCGCACAUc-UCCCGc -3'
miRNA:   3'- -CGUGUG--UGUcgUGCGUGUGuuAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 50648 0.68 0.825163
Target:  5'- aGC-CACAgcuuCAGCGCGCGCucagcaaccGCGAUCuCCGu -3'
miRNA:   3'- -CGuGUGU----GUCGUGCGUG---------UGUUAG-GGU- -5'
18538 3' -52.5 NC_004681.1 + 48886 0.67 0.868258
Target:  5'- cGCGCcugucuCACGuCACGCGgGCAccGUCCCGu -3'
miRNA:   3'- -CGUGu-----GUGUcGUGCGUgUGU--UAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.