miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18539 3' -51.6 NC_004682.1 + 46377 0.72 0.584832
Target:  5'- ---cUCGcGGAGAGCCagaGCAgcgcgcuccuugUCGCCCCg -3'
miRNA:   3'- ccaaAGC-CCUUUUGGg--CGU------------AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 20047 0.74 0.484282
Target:  5'- cGGUaUCGGGuGgcccaacgcugcucAGCCCGCAUCAgCCg -3'
miRNA:   3'- -CCAaAGCCCuU--------------UUGGGCGUAGUgGGg -5'
18539 3' -51.6 NC_004682.1 + 50794 0.66 0.909484
Target:  5'- gGGUgUCGGGGGuauGCCagg--UACCCCa -3'
miRNA:   3'- -CCAaAGCCCUUu--UGGgcguaGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 40444 0.66 0.908153
Target:  5'- ----aCGGGAcgccgguaccuACCUGCGagACCCCg -3'
miRNA:   3'- ccaaaGCCCUuu---------UGGGCGUagUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 12828 0.66 0.902719
Target:  5'- ----gCGGcucaGAAGCCCGCAgagGCCCCc -3'
miRNA:   3'- ccaaaGCCc---UUUUGGGCGUag-UGGGG- -5'
18539 3' -51.6 NC_004682.1 + 46196 0.66 0.895674
Target:  5'- ---cUCGGcGAGGucACCgGCcagguagccGUCGCCCCa -3'
miRNA:   3'- ccaaAGCC-CUUU--UGGgCG---------UAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 11755 0.66 0.895674
Target:  5'- aGGUcccgaUGGGuccGACCgGCAUCAgcaucCCCCa -3'
miRNA:   3'- -CCAaa---GCCCuu-UUGGgCGUAGU-----GGGG- -5'
18539 3' -51.6 NC_004682.1 + 4890 0.66 0.888354
Target:  5'- aGGgcUCGGu-GAGCCCGCGcUACUCg -3'
miRNA:   3'- -CCaaAGCCcuUUUGGGCGUaGUGGGg -5'
18539 3' -51.6 NC_004682.1 + 30347 0.66 0.880763
Target:  5'- --cUUCGGGGugacgauguGCCCGUucuggcUCGCCUCg -3'
miRNA:   3'- ccaAAGCCCUuu-------UGGGCGu-----AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 15633 0.67 0.872906
Target:  5'- -----gGGGGAAGCCgaGCGcUCGCCCg -3'
miRNA:   3'- ccaaagCCCUUUUGGg-CGU-AGUGGGg -5'
18539 3' -51.6 NC_004682.1 + 381 0.67 0.864792
Target:  5'- ----cCGGGAGcGCCCGgAgCGCUCCc -3'
miRNA:   3'- ccaaaGCCCUUuUGGGCgUaGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 21507 0.67 0.856426
Target:  5'- --gUUCGaGGAAGGCCCcuacaccgGCAUCAaguCCUCg -3'
miRNA:   3'- ccaAAGC-CCUUUUGGG--------CGUAGU---GGGG- -5'
18539 3' -51.6 NC_004682.1 + 48368 0.67 0.838973
Target:  5'- cGGUgccUUCGaucuGGuc-GCCCaggaGCAUCGCCCCc -3'
miRNA:   3'- -CCA---AAGC----CCuuuUGGG----CGUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 830 0.68 0.829903
Target:  5'- ----gCGGGccaGGAGCCCGCugacCACCCa -3'
miRNA:   3'- ccaaaGCCC---UUUUGGGCGua--GUGGGg -5'
18539 3' -51.6 NC_004682.1 + 38814 0.69 0.760981
Target:  5'- cGGgacugUCGGGAAGgcugcGCCgGUAUCGuuCCg -3'
miRNA:   3'- -CCaa---AGCCCUUU-----UGGgCGUAGUggGG- -5'
18539 3' -51.6 NC_004682.1 + 44104 0.71 0.663115
Target:  5'- ---gUCGGGAGGAUCgGCccgGUCACCUUg -3'
miRNA:   3'- ccaaAGCCCUUUUGGgCG---UAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 39715 0.67 0.873704
Target:  5'- aGGUaccgcugCGGGuAGAACCCGagcagugcgaagacgAUCACCUCa -3'
miRNA:   3'- -CCAaa-----GCCC-UUUUGGGCg--------------UAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 41629 0.69 0.729156
Target:  5'- ----gCGcGGAugGCUCGCAUCACCUg -3'
miRNA:   3'- ccaaaGC-CCUuuUGGGCGUAGUGGGg -5'
18539 3' -51.6 NC_004682.1 + 48104 0.7 0.704127
Target:  5'- --gUUCGGGuugacguuGCCguaucgaaucgccaUGCGUCACCCCa -3'
miRNA:   3'- ccaAAGCCCuuu-----UGG--------------GCGUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 18907 0.7 0.696426
Target:  5'- uGGUcgagUCGGGAGAGagccaaaCCGCGUCugCg- -3'
miRNA:   3'- -CCAa---AGCCCUUUUg------GGCGUAGugGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.