miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18539 3' -51.6 NC_004682.1 + 50595 1.14 0.001219
Target:  5'- gGGUUUCGGGAAAACCCGCAUCACCCCc -3'
miRNA:   3'- -CCAAAGCCCUUUUGGGCGUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 1588 0.83 0.14755
Target:  5'- gGGUgagCGGGAGua-CCGCGUCAUCCCu -3'
miRNA:   3'- -CCAaa-GCCCUUuugGGCGUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 20047 0.74 0.484282
Target:  5'- cGGUaUCGGGuGgcccaacgcugcucAGCCCGCAUCAgCCg -3'
miRNA:   3'- -CCAaAGCCCuU--------------UUGGGCGUAGUgGGg -5'
18539 3' -51.6 NC_004682.1 + 35644 0.73 0.519162
Target:  5'- gGGggagGGGAAGGCCCGCcaaggaaACCCCu -3'
miRNA:   3'- -CCaaagCCCUUUUGGGCGuag----UGGGG- -5'
18539 3' -51.6 NC_004682.1 + 888 0.72 0.562689
Target:  5'- ---aUCGGGAcgGCCacagGCAUCgcacGCCCCa -3'
miRNA:   3'- ccaaAGCCCUuuUGGg---CGUAG----UGGGG- -5'
18539 3' -51.6 NC_004682.1 + 46377 0.72 0.584832
Target:  5'- ---cUCGcGGAGAGCCagaGCAgcgcgcuccuugUCGCCCCg -3'
miRNA:   3'- ccaaAGC-CCUUUUGGg--CGU------------AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 7332 0.72 0.595969
Target:  5'- ----cCGGGAcuacaAGACCgGCAaCACCCCc -3'
miRNA:   3'- ccaaaGCCCU-----UUUGGgCGUaGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 41300 0.71 0.618328
Target:  5'- cGGUcUCGGGGucgacGCCCaGCuccUCGCCCUu -3'
miRNA:   3'- -CCAaAGCCCUuu---UGGG-CGu--AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 44104 0.71 0.663115
Target:  5'- ---gUCGGGAGGAUCgGCccgGUCACCUUg -3'
miRNA:   3'- ccaaAGCCCUUUUGGgCG---UAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 48637 0.7 0.680934
Target:  5'- cGGUgucacccUUCGGGccuugugggccuugGGAACCCGUGUCuCCCUu -3'
miRNA:   3'- -CCA-------AAGCCC--------------UUUUGGGCGUAGuGGGG- -5'
18539 3' -51.6 NC_004682.1 + 13446 0.7 0.685371
Target:  5'- cGGccUCGGGAGuaccucACCCgGUA-CGCCCCg -3'
miRNA:   3'- -CCaaAGCCCUUu-----UGGG-CGUaGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 48484 0.7 0.685371
Target:  5'- cGGUgucuccggUGGGAccgauuGGGCCgGUAUCGCCCUu -3'
miRNA:   3'- -CCAaa------GCCCU------UUUGGgCGUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 18907 0.7 0.696426
Target:  5'- uGGUcgagUCGGGAGAGagccaaaCCGCGUCugCg- -3'
miRNA:   3'- -CCAa---AGCCCUUUUg------GGCGUAGugGgg -5'
18539 3' -51.6 NC_004682.1 + 48104 0.7 0.704127
Target:  5'- --gUUCGGGuugacguuGCCguaucgaaucgccaUGCGUCACCCCa -3'
miRNA:   3'- ccaAAGCCCuuu-----UGG--------------GCGUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 41629 0.69 0.729156
Target:  5'- ----gCGcGGAugGCUCGCAUCACCUg -3'
miRNA:   3'- ccaaaGC-CCUuuUGGGCGUAGUGGGg -5'
18539 3' -51.6 NC_004682.1 + 22246 0.69 0.750493
Target:  5'- -----gGGGGGAGgCCGgAUCGCUCCg -3'
miRNA:   3'- ccaaagCCCUUUUgGGCgUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 38814 0.69 0.760981
Target:  5'- cGGgacugUCGGGAAGgcugcGCCgGUAUCGuuCCg -3'
miRNA:   3'- -CCaa---AGCCCUUU-----UGGgCGUAGUggGG- -5'
18539 3' -51.6 NC_004682.1 + 3340 0.68 0.801443
Target:  5'- ---cUUGGGAGgcacGACCucuCGCAUCACCUa -3'
miRNA:   3'- ccaaAGCCCUU----UUGG---GCGUAGUGGGg -5'
18539 3' -51.6 NC_004682.1 + 8063 0.68 0.811128
Target:  5'- ----aUGGGAccgAAGCCCG-GUCugCCCg -3'
miRNA:   3'- ccaaaGCCCU---UUUGGGCgUAGugGGG- -5'
18539 3' -51.6 NC_004682.1 + 830 0.68 0.829903
Target:  5'- ----gCGGGccaGGAGCCCGCugacCACCCa -3'
miRNA:   3'- ccaaaGCCC---UUUUGGGCGua--GUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.