miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18539 3' -51.6 NC_004682.1 + 307 0.67 0.856425
Target:  5'- cGGUagCGGGu--ACCC-CAccuggCACCCCc -3'
miRNA:   3'- -CCAaaGCCCuuuUGGGcGUa----GUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 381 0.67 0.864792
Target:  5'- ----cCGGGAGcGCCCGgAgCGCUCCc -3'
miRNA:   3'- ccaaaGCCCUUuUGGGCgUaGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 830 0.68 0.829903
Target:  5'- ----gCGGGccaGGAGCCCGCugacCACCCa -3'
miRNA:   3'- ccaaaGCCC---UUUUGGGCGua--GUGGGg -5'
18539 3' -51.6 NC_004682.1 + 888 0.72 0.562689
Target:  5'- ---aUCGGGAcgGCCacagGCAUCgcacGCCCCa -3'
miRNA:   3'- ccaaAGCCCUuuUGGg---CGUAG----UGGGG- -5'
18539 3' -51.6 NC_004682.1 + 1588 0.83 0.14755
Target:  5'- gGGUgagCGGGAGua-CCGCGUCAUCCCu -3'
miRNA:   3'- -CCAaa-GCCCUUuugGGCGUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 3340 0.68 0.801443
Target:  5'- ---cUUGGGAGgcacGACCucuCGCAUCACCUa -3'
miRNA:   3'- ccaaAGCCCUU----UUGG---GCGUAGUGGGg -5'
18539 3' -51.6 NC_004682.1 + 4890 0.66 0.888354
Target:  5'- aGGgcUCGGu-GAGCCCGCGcUACUCg -3'
miRNA:   3'- -CCaaAGCCcuUUUGGGCGUaGUGGGg -5'
18539 3' -51.6 NC_004682.1 + 7332 0.72 0.595969
Target:  5'- ----cCGGGAcuacaAGACCgGCAaCACCCCc -3'
miRNA:   3'- ccaaaGCCCU-----UUUGGgCGUaGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 8063 0.68 0.811128
Target:  5'- ----aUGGGAccgAAGCCCG-GUCugCCCg -3'
miRNA:   3'- ccaaaGCCCU---UUUGGGCgUAGugGGG- -5'
18539 3' -51.6 NC_004682.1 + 11124 0.67 0.838973
Target:  5'- ---cUCGGGuucuACCCGCAgcggUACCUg -3'
miRNA:   3'- ccaaAGCCCuuu-UGGGCGUa---GUGGGg -5'
18539 3' -51.6 NC_004682.1 + 11755 0.66 0.895674
Target:  5'- aGGUcccgaUGGGuccGACCgGCAUCAgcaucCCCCa -3'
miRNA:   3'- -CCAaa---GCCCuu-UUGGgCGUAGU-----GGGG- -5'
18539 3' -51.6 NC_004682.1 + 12828 0.66 0.902719
Target:  5'- ----gCGGcucaGAAGCCCGCAgagGCCCCc -3'
miRNA:   3'- ccaaaGCCc---UUUUGGGCGUag-UGGGG- -5'
18539 3' -51.6 NC_004682.1 + 13446 0.7 0.685371
Target:  5'- cGGccUCGGGAGuaccucACCCgGUA-CGCCCCg -3'
miRNA:   3'- -CCaaAGCCCUUu-----UGGG-CGUaGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 13532 0.66 0.880763
Target:  5'- gGGaUUCGGGAucGACCUGCu--GCCUg -3'
miRNA:   3'- -CCaAAGCCCUu-UUGGGCGuagUGGGg -5'
18539 3' -51.6 NC_004682.1 + 15633 0.67 0.872906
Target:  5'- -----gGGGGAAGCCgaGCGcUCGCCCg -3'
miRNA:   3'- ccaaagCCCUUUUGGg-CGU-AGUGGGg -5'
18539 3' -51.6 NC_004682.1 + 18907 0.7 0.696426
Target:  5'- uGGUcgagUCGGGAGAGagccaaaCCGCGUCugCg- -3'
miRNA:   3'- -CCAa---AGCCCUUUUg------GGCGUAGugGgg -5'
18539 3' -51.6 NC_004682.1 + 20047 0.74 0.484282
Target:  5'- cGGUaUCGGGuGgcccaacgcugcucAGCCCGCAUCAgCCg -3'
miRNA:   3'- -CCAaAGCCCuU--------------UUGGGCGUAGUgGGg -5'
18539 3' -51.6 NC_004682.1 + 21507 0.67 0.856426
Target:  5'- --gUUCGaGGAAGGCCCcuacaccgGCAUCAaguCCUCg -3'
miRNA:   3'- ccaAAGC-CCUUUUGGG--------CGUAGU---GGGG- -5'
18539 3' -51.6 NC_004682.1 + 22246 0.69 0.750493
Target:  5'- -----gGGGGGAGgCCGgAUCGCUCCg -3'
miRNA:   3'- ccaaagCCCUUUUgGGCgUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 27499 0.66 0.895674
Target:  5'- cGGgUUCGGGGuagucACCCGU--UACCUCc -3'
miRNA:   3'- -CCaAAGCCCUuu---UGGGCGuaGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.