miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18539 3' -51.6 NC_004682.1 + 30347 0.66 0.880763
Target:  5'- --cUUCGGGGugacgauguGCCCGUucuggcUCGCCUCg -3'
miRNA:   3'- ccaAAGCCCUuu-------UGGGCGu-----AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 35644 0.73 0.519162
Target:  5'- gGGggagGGGAAGGCCCGCcaaggaaACCCCu -3'
miRNA:   3'- -CCaaagCCCUUUUGGGCGuag----UGGGG- -5'
18539 3' -51.6 NC_004682.1 + 38814 0.69 0.760981
Target:  5'- cGGgacugUCGGGAAGgcugcGCCgGUAUCGuuCCg -3'
miRNA:   3'- -CCaa---AGCCCUUU-----UGGgCGUAGUggGG- -5'
18539 3' -51.6 NC_004682.1 + 39715 0.67 0.873704
Target:  5'- aGGUaccgcugCGGGuAGAACCCGagcagugcgaagacgAUCACCUCa -3'
miRNA:   3'- -CCAaa-----GCCC-UUUUGGGCg--------------UAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 40444 0.66 0.908153
Target:  5'- ----aCGGGAcgccgguaccuACCUGCGagACCCCg -3'
miRNA:   3'- ccaaaGCCCUuu---------UGGGCGUagUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 41300 0.71 0.618328
Target:  5'- cGGUcUCGGGGucgacGCCCaGCuccUCGCCCUu -3'
miRNA:   3'- -CCAaAGCCCUuu---UGGG-CGu--AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 41629 0.69 0.729156
Target:  5'- ----gCGcGGAugGCUCGCAUCACCUg -3'
miRNA:   3'- ccaaaGC-CCUuuUGGGCGUAGUGGGg -5'
18539 3' -51.6 NC_004682.1 + 42314 0.66 0.888354
Target:  5'- gGGUUgccgUCGuGGAAGACCUcuuGCucgAUCACCgCg -3'
miRNA:   3'- -CCAA----AGC-CCUUUUGGG---CG---UAGUGGgG- -5'
18539 3' -51.6 NC_004682.1 + 44104 0.71 0.663115
Target:  5'- ---gUCGGGAGGAUCgGCccgGUCACCUUg -3'
miRNA:   3'- ccaaAGCCCUUUUGGgCG---UAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 45700 0.66 0.909483
Target:  5'- uGGccUCGGaGAu-GCCCGCAgcaCGCgCCa -3'
miRNA:   3'- -CCaaAGCC-CUuuUGGGCGUa--GUGgGG- -5'
18539 3' -51.6 NC_004682.1 + 46196 0.66 0.895674
Target:  5'- ---cUCGGcGAGGucACCgGCcagguagccGUCGCCCCa -3'
miRNA:   3'- ccaaAGCC-CUUU--UGGgCG---------UAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 46328 0.66 0.880763
Target:  5'- cGGUcguaGGGAAGuACCuucuccgucauCGCGUCagGCCCCg -3'
miRNA:   3'- -CCAaag-CCCUUU-UGG-----------GCGUAG--UGGGG- -5'
18539 3' -51.6 NC_004682.1 + 46377 0.72 0.584832
Target:  5'- ---cUCGcGGAGAGCCagaGCAgcgcgcuccuugUCGCCCCg -3'
miRNA:   3'- ccaaAGC-CCUUUUGGg--CGU------------AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 47591 0.66 0.888354
Target:  5'- cGGg--UGGGuu-GCCUGCGccgccgaugUCGCCCUg -3'
miRNA:   3'- -CCaaaGCCCuuuUGGGCGU---------AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 48104 0.7 0.704127
Target:  5'- --gUUCGGGuugacguuGCCguaucgaaucgccaUGCGUCACCCCa -3'
miRNA:   3'- ccaAAGCCCuuu-----UGG--------------GCGUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 48368 0.67 0.838973
Target:  5'- cGGUgccUUCGaucuGGuc-GCCCaggaGCAUCGCCCCc -3'
miRNA:   3'- -CCA---AAGC----CCuuuUGGG----CGUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 48484 0.7 0.685371
Target:  5'- cGGUgucuccggUGGGAccgauuGGGCCgGUAUCGCCCUu -3'
miRNA:   3'- -CCAaa------GCCCU------UUUGGgCGUAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 48637 0.7 0.680934
Target:  5'- cGGUgucacccUUCGGGccuugugggccuugGGAACCCGUGUCuCCCUu -3'
miRNA:   3'- -CCA-------AAGCCC--------------UUUUGGGCGUAGuGGGG- -5'
18539 3' -51.6 NC_004682.1 + 50524 0.66 0.880763
Target:  5'- -----aGGGngAGGCCC-CAucucUCACCCCu -3'
miRNA:   3'- ccaaagCCCu-UUUGGGcGU----AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 50595 1.14 0.001219
Target:  5'- gGGUUUCGGGAAAACCCGCAUCACCCCc -3'
miRNA:   3'- -CCAAAGCCCUUUUGGGCGUAGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.