Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18539 | 3' | -51.6 | NC_004682.1 | + | 48368 | 0.67 | 0.838973 |
Target: 5'- cGGUgccUUCGaucuGGuc-GCCCaggaGCAUCGCCCCc -3' miRNA: 3'- -CCA---AAGC----CCuuuUGGG----CGUAGUGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 11124 | 0.67 | 0.838973 |
Target: 5'- ---cUCGGGuucuACCCGCAgcggUACCUg -3' miRNA: 3'- ccaaAGCCCuuu-UGGGCGUa---GUGGGg -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 307 | 0.67 | 0.856425 |
Target: 5'- cGGUagCGGGu--ACCC-CAccuggCACCCCc -3' miRNA: 3'- -CCAaaGCCCuuuUGGGcGUa----GUGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 21507 | 0.67 | 0.856426 |
Target: 5'- --gUUCGaGGAAGGCCCcuacaccgGCAUCAaguCCUCg -3' miRNA: 3'- ccaAAGC-CCUUUUGGG--------CGUAGU---GGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 381 | 0.67 | 0.864792 |
Target: 5'- ----cCGGGAGcGCCCGgAgCGCUCCc -3' miRNA: 3'- ccaaaGCCCUUuUGGGCgUaGUGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 15633 | 0.67 | 0.872906 |
Target: 5'- -----gGGGGAAGCCgaGCGcUCGCCCg -3' miRNA: 3'- ccaaagCCCUUUUGGg-CGU-AGUGGGg -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 39715 | 0.67 | 0.873704 |
Target: 5'- aGGUaccgcugCGGGuAGAACCCGagcagugcgaagacgAUCACCUCa -3' miRNA: 3'- -CCAaa-----GCCC-UUUUGGGCg--------------UAGUGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 50524 | 0.66 | 0.880763 |
Target: 5'- -----aGGGngAGGCCC-CAucucUCACCCCu -3' miRNA: 3'- ccaaagCCCu-UUUGGGcGU----AGUGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 13532 | 0.66 | 0.880763 |
Target: 5'- gGGaUUCGGGAucGACCUGCu--GCCUg -3' miRNA: 3'- -CCaAAGCCCUu-UUGGGCGuagUGGGg -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 46328 | 0.66 | 0.880763 |
Target: 5'- cGGUcguaGGGAAGuACCuucuccgucauCGCGUCagGCCCCg -3' miRNA: 3'- -CCAaag-CCCUUU-UGG-----------GCGUAG--UGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 30347 | 0.66 | 0.880763 |
Target: 5'- --cUUCGGGGugacgauguGCCCGUucuggcUCGCCUCg -3' miRNA: 3'- ccaAAGCCCUuu-------UGGGCGu-----AGUGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 42314 | 0.66 | 0.888354 |
Target: 5'- gGGUUgccgUCGuGGAAGACCUcuuGCucgAUCACCgCg -3' miRNA: 3'- -CCAA----AGC-CCUUUUGGG---CG---UAGUGGgG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 47591 | 0.66 | 0.888354 |
Target: 5'- cGGg--UGGGuu-GCCUGCGccgccgaugUCGCCCUg -3' miRNA: 3'- -CCaaaGCCCuuuUGGGCGU---------AGUGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 4890 | 0.66 | 0.888354 |
Target: 5'- aGGgcUCGGu-GAGCCCGCGcUACUCg -3' miRNA: 3'- -CCaaAGCCcuUUUGGGCGUaGUGGGg -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 27499 | 0.66 | 0.895674 |
Target: 5'- cGGgUUCGGGGuagucACCCGU--UACCUCc -3' miRNA: 3'- -CCaAAGCCCUuu---UGGGCGuaGUGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 46196 | 0.66 | 0.895674 |
Target: 5'- ---cUCGGcGAGGucACCgGCcagguagccGUCGCCCCa -3' miRNA: 3'- ccaaAGCC-CUUU--UGGgCG---------UAGUGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 11755 | 0.66 | 0.895674 |
Target: 5'- aGGUcccgaUGGGuccGACCgGCAUCAgcaucCCCCa -3' miRNA: 3'- -CCAaa---GCCCuu-UUGGgCGUAGU-----GGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 12828 | 0.66 | 0.902719 |
Target: 5'- ----gCGGcucaGAAGCCCGCAgagGCCCCc -3' miRNA: 3'- ccaaaGCCc---UUUUGGGCGUag-UGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 40444 | 0.66 | 0.908153 |
Target: 5'- ----aCGGGAcgccgguaccuACCUGCGagACCCCg -3' miRNA: 3'- ccaaaGCCCUuu---------UGGGCGUagUGGGG- -5' |
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18539 | 3' | -51.6 | NC_004682.1 | + | 45700 | 0.66 | 0.909483 |
Target: 5'- uGGccUCGGaGAu-GCCCGCAgcaCGCgCCa -3' miRNA: 3'- -CCaaAGCC-CUuuUGGGCGUa--GUGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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