miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18542 5' -55.5 NC_004682.1 + 50515 0.69 0.501881
Target:  5'- -gGCCGAGCC--AGGGngaGGCCCCAu -3'
miRNA:   3'- gaUGGCUCGGcuUUCUuggUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 50367 0.68 0.552074
Target:  5'- -cGCCGgaagcggcccuggaGGCCGcuGGAuACCGGCCCUg -3'
miRNA:   3'- gaUGGC--------------UCGGCuuUCU-UGGUCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 49410 0.67 0.632516
Target:  5'- gCUcCCGAG-CGAAGGcuUCAGCCUCAg -3'
miRNA:   3'- -GAuGGCUCgGCUUUCuuGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 48600 0.7 0.402713
Target:  5'- cCUugCGGGCCGguGGGACCuGCUgggCCGg -3'
miRNA:   3'- -GAugGCUCGGCuuUCUUGGuCGG---GGU- -5'
18542 5' -55.5 NC_004682.1 + 46701 1.08 0.000911
Target:  5'- cCUACCGAGCCGAAAGAACCAGCCCCAc -3'
miRNA:   3'- -GAUGGCUCGGCUUUCUUGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 46364 0.67 0.588207
Target:  5'- -gGCC---CCGGAAGAucuCCAGCCCCc -3'
miRNA:   3'- gaUGGcucGGCUUUCUu--GGUCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 45556 0.73 0.301468
Target:  5'- -cGCCgGGGCCGGcguGAGCagCAGCCCCAg -3'
miRNA:   3'- gaUGG-CUCGGCUuu-CUUG--GUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 45380 0.69 0.470906
Target:  5'- -gGCCGcGCCGAu---GCCGGCCCa- -3'
miRNA:   3'- gaUGGCuCGGCUuucuUGGUCGGGgu -5'
18542 5' -55.5 NC_004682.1 + 44095 0.71 0.366662
Target:  5'- cCUGCCuccGUCGGGAGGAUCGGCCCg- -3'
miRNA:   3'- -GAUGGcu-CGGCUUUCUUGGUCGGGgu -5'
18542 5' -55.5 NC_004682.1 + 43706 0.66 0.68671
Target:  5'- -aGCCGAGCgucuucuCGGGcAGGuACCAGCCgCCGu -3'
miRNA:   3'- gaUGGCUCG-------GCUU-UCU-UGGUCGG-GGU- -5'
18542 5' -55.5 NC_004682.1 + 42298 0.67 0.592621
Target:  5'- gCUGCCGAcucauGCggaccuuccucggugCGguAGAGCCAGCUCCGc -3'
miRNA:   3'- -GAUGGCU-----CG---------------GCuuUCUUGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 41873 0.72 0.324819
Target:  5'- -cGCCGAGCCGGAAGccCUcaAGCUCCu -3'
miRNA:   3'- gaUGGCUCGGCUUUCuuGG--UCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 40122 0.69 0.470906
Target:  5'- gCUGCCGAGUCGucaucGAGGucuagGCCggcguugguGGCCCCGa -3'
miRNA:   3'- -GAUGGCUCGGCu----UUCU-----UGG---------UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 38187 0.72 0.324819
Target:  5'- cCUACgGAGUCGAcagAAGGACCgggggcucuaGGCCCCc -3'
miRNA:   3'- -GAUGgCUCGGCU---UUCUUGG----------UCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 37252 0.66 0.675711
Target:  5'- aUGCCGccacgguGGCCGugGGuggucAACCAGCCCg- -3'
miRNA:   3'- gAUGGC-------UCGGCuuUC-----UUGGUCGGGgu -5'
18542 5' -55.5 NC_004682.1 + 36244 0.67 0.588207
Target:  5'- gUACUGAGCgGgcAGGACCGgagcgucguuGUCCCAc -3'
miRNA:   3'- gAUGGCUCGgCuuUCUUGGU----------CGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 35529 0.72 0.332082
Target:  5'- -gACCGGGCCGuagucgauGAACCgguugcuguaguuGGCCCCGa -3'
miRNA:   3'- gaUGGCUCGGCuuu-----CUUGG-------------UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 34487 0.69 0.491453
Target:  5'- -gGCC-AGUCGAccgucguuGAGGGCgCGGCCCCAg -3'
miRNA:   3'- gaUGGcUCGGCU--------UUCUUG-GUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 33998 0.69 0.481126
Target:  5'- -cACCaGGCCGAuggcGGGugCAGCCgCCAc -3'
miRNA:   3'- gaUGGcUCGGCUu---UCUugGUCGG-GGU- -5'
18542 5' -55.5 NC_004682.1 + 33232 0.71 0.366662
Target:  5'- -gGCCaGGCCGAAAc--CCAGCCCCc -3'
miRNA:   3'- gaUGGcUCGGCUUUcuuGGUCGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.