miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18543 5' -58 NC_004682.1 + 44727 0.67 0.471916
Target:  5'- aGGC-CGCGuaGCGggCCAGCAUCgucuucugccaacgGCUCa -3'
miRNA:   3'- -CCGuGUGC--CGCuaGGUCGUGGa-------------CGAG- -5'
18543 5' -58 NC_004682.1 + 34186 0.66 0.51913
Target:  5'- aGCGCAUGcCGcg-CAGCGCCUGCUg -3'
miRNA:   3'- cCGUGUGCcGCuagGUCGUGGACGAg -5'
18543 5' -58 NC_004682.1 + 34405 0.66 0.51913
Target:  5'- aGGCGUACGuGUGGUUCAGCAgcgggcguucccUCUGCUg -3'
miRNA:   3'- -CCGUGUGC-CGCUAGGUCGU------------GGACGAg -5'
18543 5' -58 NC_004682.1 + 10404 0.66 0.538116
Target:  5'- aGGUAC-CGGCGucccguugguguUCCuGCACggGCUCa -3'
miRNA:   3'- -CCGUGuGCCGCu-----------AGGuCGUGgaCGAG- -5'
18543 5' -58 NC_004682.1 + 1543 0.72 0.227722
Target:  5'- cGCACGCGGCGAcgugcUgCGGguCCUGgUCg -3'
miRNA:   3'- cCGUGUGCCGCU-----AgGUCguGGACgAG- -5'
18543 5' -58 NC_004682.1 + 45823 0.71 0.25842
Target:  5'- uGGCGCACuGGUcgaacgaGAUCCAGUAgcCCUGCg- -3'
miRNA:   3'- -CCGUGUG-CCG-------CUAGGUCGU--GGACGag -5'
18543 5' -58 NC_004682.1 + 45633 0.77 0.100427
Target:  5'- cGGUugACGGUGGUgCAGUcgGCCUGCUUc -3'
miRNA:   3'- -CCGugUGCCGCUAgGUCG--UGGACGAG- -5'
18543 5' -58 NC_004682.1 + 43632 0.75 0.140369
Target:  5'- cGGCAUgaACGGCGAgCCAGCG--UGCUCa -3'
miRNA:   3'- -CCGUG--UGCCGCUaGGUCGUggACGAG- -5'
18543 5' -58 NC_004682.1 + 46484 0.72 0.227722
Target:  5'- cGGUG-ACGGCGGUcaCCAGCGCCUuggugagcgGCUCa -3'
miRNA:   3'- -CCGUgUGCCGCUA--GGUCGUGGA---------CGAG- -5'
18543 5' -58 NC_004682.1 + 24155 0.68 0.390924
Target:  5'- gGGCAa--GGCGAUCCuggaggacauggcGGCGaagCUGCUCg -3'
miRNA:   3'- -CCGUgugCCGCUAGG-------------UCGUg--GACGAG- -5'
18543 5' -58 NC_004682.1 + 9388 0.67 0.457977
Target:  5'- --gGCGCGGuCGA-CgAGCGCCUGCg- -3'
miRNA:   3'- ccgUGUGCC-GCUaGgUCGUGGACGag -5'
18543 5' -58 NC_004682.1 + 46129 1.12 0.00026
Target:  5'- cGGCACACGGCGAUCCAGCACCUGCUCg -3'
miRNA:   3'- -CCGUGUGCCGCUAGGUCGUGGACGAG- -5'
18543 5' -58 NC_004682.1 + 20057 0.68 0.428874
Target:  5'- aGGCucGCACGGCucgcaugucGAUcaCCGGCAUCccgGCUCa -3'
miRNA:   3'- -CCG--UGUGCCG---------CUA--GGUCGUGGa--CGAG- -5'
18543 5' -58 NC_004682.1 + 15175 0.73 0.189271
Target:  5'- gGGCAUcaGGCGugaagaacgcCCAGCACCUGUUCa -3'
miRNA:   3'- -CCGUGugCCGCua--------GGUCGUGGACGAG- -5'
18543 5' -58 NC_004682.1 + 42638 0.66 0.498353
Target:  5'- cGGCACGCcacaagGGCGGUCCAGUcgUUGgaCu -3'
miRNA:   3'- -CCGUGUG------CCGCUAGGUCGugGACgaG- -5'
18543 5' -58 NC_004682.1 + 24996 0.66 0.498353
Target:  5'- gGGUACgACGcCGAcUCggCGGCAUCUGCUCg -3'
miRNA:   3'- -CCGUG-UGCcGCU-AG--GUCGUGGACGAG- -5'
18543 5' -58 NC_004682.1 + 29906 0.67 0.487084
Target:  5'- cGCcgaACGCGcCGAUCCGGCgcaguuccuggauACCUGCUg -3'
miRNA:   3'- cCG---UGUGCcGCUAGGUCG-------------UGGACGAg -5'
18543 5' -58 NC_004682.1 + 15970 0.67 0.477955
Target:  5'- --aGCACGGCaGAUCC-GCaagGCCgGCUCa -3'
miRNA:   3'- ccgUGUGCCG-CUAGGuCG---UGGaCGAG- -5'
18543 5' -58 NC_004682.1 + 35744 0.67 0.467911
Target:  5'- cGGCGCGCucaccggggaGGUGAUagcgcucguccaCCAGCGCCagGUUCc -3'
miRNA:   3'- -CCGUGUG----------CCGCUA------------GGUCGUGGa-CGAG- -5'
18543 5' -58 NC_004682.1 + 21187 0.69 0.373225
Target:  5'- cGGCGCuaccuccACGGCGAagaCCcGCACCcGUUCg -3'
miRNA:   3'- -CCGUG-------UGCCGCUa--GGuCGUGGaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.