miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18544 3' -60.1 NC_004682.1 + 43429 0.66 0.47808
Target:  5'- cCCCGAucuGCGgGGGCUCgauGCCGuAGg -3'
miRNA:   3'- cGGGCUcauCGCgCCCGAG---UGGC-UCg -5'
18544 3' -60.1 NC_004682.1 + 50579 0.66 0.468295
Target:  5'- -aCCGGGUAG-GCaGGGCagguggggUACCGGGUa -3'
miRNA:   3'- cgGGCUCAUCgCG-CCCGa-------GUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 23263 0.66 0.468295
Target:  5'- uGCgCGAGgAGCuGCGGacggaGCgCAUCGAGCg -3'
miRNA:   3'- -CGgGCUCaUCG-CGCC-----CGaGUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 46111 0.66 0.468295
Target:  5'- aCUCGAuccacuucGUGGcCGCGucGGCagCGCCGAGCg -3'
miRNA:   3'- cGGGCU--------CAUC-GCGC--CCGa-GUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 7565 0.66 0.458614
Target:  5'- cUCCGAGgccgGCGGGCgCAUCGAGg -3'
miRNA:   3'- cGGGCUCaucgCGCCCGaGUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 26816 0.66 0.458614
Target:  5'- gGUgCGAGUcccuGGCGCGGGaCUUGaagcgguucaguUCGAGCu -3'
miRNA:   3'- -CGgGCUCA----UCGCGCCC-GAGU------------GGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 475 0.66 0.458614
Target:  5'- gGCCUccaGGGccGCuuccgGCGGcGCUCACCGAcGCg -3'
miRNA:   3'- -CGGG---CUCauCG-----CGCC-CGAGUGGCU-CG- -5'
18544 3' -60.1 NC_004682.1 + 26842 0.66 0.449041
Target:  5'- gGCCCGAGUGcuGCucuGCGGucugaCUCG-CGAGCa -3'
miRNA:   3'- -CGGGCUCAU--CG---CGCCc----GAGUgGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 39337 0.66 0.449041
Target:  5'- uGCCCGAGcccugAGUG-GGGUcgaaCGCCGGGg -3'
miRNA:   3'- -CGGGCUCa----UCGCgCCCGa---GUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 29214 0.66 0.439579
Target:  5'- gGgCCGAGUugAGCcuGCGGGUcaggUCugCGAGa -3'
miRNA:   3'- -CgGGCUCA--UCG--CGCCCG----AGugGCUCg -5'
18544 3' -60.1 NC_004682.1 + 25630 0.66 0.439579
Target:  5'- uCCCGucgaAGUAGCGCuguccGGGCgcucCACUGGGg -3'
miRNA:   3'- cGGGC----UCAUCGCG-----CCCGa---GUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 27395 0.66 0.43864
Target:  5'- cGCCgguaCGGGUGGCcaCGGGCggcacaaUCGCCGucGGCg -3'
miRNA:   3'- -CGG----GCUCAUCGc-GCCCG-------AGUGGC--UCG- -5'
18544 3' -60.1 NC_004682.1 + 8667 0.66 0.430232
Target:  5'- -aCCGAGgagcaGGaCGCGGcCUCgcgggGCCGAGCg -3'
miRNA:   3'- cgGGCUCa----UC-GCGCCcGAG-----UGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 48986 0.66 0.430232
Target:  5'- gGCCCGAuggGGC-CGGGgagC-CCGAGCa -3'
miRNA:   3'- -CGGGCUca-UCGcGCCCga-GuGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 27991 0.67 0.419172
Target:  5'- -aCCGcGcaccAGCGCGGGCUCcgggaccuucuuCCGGGCc -3'
miRNA:   3'- cgGGCuCa---UCGCGCCCGAGu-----------GGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 8510 0.67 0.402909
Target:  5'- cCCCGA--AGUGCGGaGCUggcucuaccgCACCGAGg -3'
miRNA:   3'- cGGGCUcaUCGCGCC-CGA----------GUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 13643 0.67 0.394048
Target:  5'- -aUCGAGUGGCGUGGaGUgCGgUGGGCg -3'
miRNA:   3'- cgGGCUCAUCGCGCC-CGaGUgGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 42754 0.67 0.394048
Target:  5'- cGgCUGGGUcAGgacgugccaCGCGGGCagACCGGGCu -3'
miRNA:   3'- -CgGGCUCA-UC---------GCGCCCGagUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 42263 0.67 0.394048
Target:  5'- gGCCgGGGUagccAGCGCGGuGCau-CCGcAGCa -3'
miRNA:   3'- -CGGgCUCA----UCGCGCC-CGaguGGC-UCG- -5'
18544 3' -60.1 NC_004682.1 + 41397 0.67 0.394048
Target:  5'- cGUCCGGGcAGCuGCGucGGUg-ACCGAGCg -3'
miRNA:   3'- -CGGGCUCaUCG-CGC--CCGagUGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.