miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18544 3' -60.1 NC_004682.1 + 475 0.66 0.458614
Target:  5'- gGCCUccaGGGccGCuuccgGCGGcGCUCACCGAcGCg -3'
miRNA:   3'- -CGGG---CUCauCG-----CGCC-CGAGUGGCU-CG- -5'
18544 3' -60.1 NC_004682.1 + 1835 0.67 0.376711
Target:  5'- cGCCCGuccgGGCGUcugcucGGGCUCcCCG-GCc -3'
miRNA:   3'- -CGGGCuca-UCGCG------CCCGAGuGGCuCG- -5'
18544 3' -60.1 NC_004682.1 + 2956 0.71 0.210068
Target:  5'- uUCUGG--GGCGCGGGCggcggCGCUGGGCa -3'
miRNA:   3'- cGGGCUcaUCGCGCCCGa----GUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 4944 0.69 0.290858
Target:  5'- aGCCCGAGUGcggcuacucGCGCuGGGacgaagccaUCACCGAc- -3'
miRNA:   3'- -CGGGCUCAU---------CGCG-CCCg--------AGUGGCUcg -5'
18544 3' -60.1 NC_004682.1 + 7565 0.66 0.458614
Target:  5'- cUCCGAGgccgGCGGGCgCAUCGAGg -3'
miRNA:   3'- cGGGCUCaucgCGCCCGaGUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 8510 0.67 0.402909
Target:  5'- cCCCGA--AGUGCGGaGCUggcucuaccgCACCGAGg -3'
miRNA:   3'- cGGGCUcaUCGCGCC-CGA----------GUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 8667 0.66 0.430232
Target:  5'- -aCCGAGgagcaGGaCGCGGcCUCgcgggGCCGAGCg -3'
miRNA:   3'- cgGGCUCa----UC-GCGCCcGAG-----UGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 10415 0.7 0.263672
Target:  5'- uCCCGuuGGUGuuccuGCaCGGGCUCACCguGAGCg -3'
miRNA:   3'- cGGGC--UCAU-----CGcGCCCGAGUGG--CUCG- -5'
18544 3' -60.1 NC_004682.1 + 13643 0.67 0.394048
Target:  5'- -aUCGAGUGGCGUGGaGUgCGgUGGGCg -3'
miRNA:   3'- cgGGCUCAUCGCGCC-CGaGUgGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 13993 0.69 0.283862
Target:  5'- cGCCuCGcAGUGGCcUGGGgUCAUCGAGg -3'
miRNA:   3'- -CGG-GC-UCAUCGcGCCCgAGUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 20681 0.69 0.281789
Target:  5'- uGCCCGAGgacaaGGCGCagugGGGCgcucaggagaucgcUCgccugaugGCCGAGCa -3'
miRNA:   3'- -CGGGCUCa----UCGCG----CCCG--------------AG--------UGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 20752 0.71 0.215526
Target:  5'- aGCCCG-GUGGUcCGGGUUCauggaucacuACCGGGUg -3'
miRNA:   3'- -CGGGCuCAUCGcGCCCGAG----------UGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 23009 0.68 0.351685
Target:  5'- cGCCCGucGgaaAGCacCGGGCUucaugaCACCGGGCu -3'
miRNA:   3'- -CGGGCu-Ca--UCGc-GCCCGA------GUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 23263 0.66 0.468295
Target:  5'- uGCgCGAGgAGCuGCGGacggaGCgCAUCGAGCg -3'
miRNA:   3'- -CGgGCUCaUCG-CGCC-----CGaGUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 23649 0.72 0.179771
Target:  5'- cGCCCagcagGAGaccGGCGCGaaguGGgUCGCCGAGCa -3'
miRNA:   3'- -CGGG-----CUCa--UCGCGC----CCgAGUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 25630 0.66 0.439579
Target:  5'- uCCCGucgaAGUAGCGCuguccGGGCgcucCACUGGGg -3'
miRNA:   3'- cGGGC----UCAUCGCG-----CCCGa---GUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 26816 0.66 0.458614
Target:  5'- gGUgCGAGUcccuGGCGCGGGaCUUGaagcgguucaguUCGAGCu -3'
miRNA:   3'- -CGgGCUCA----UCGCGCCC-GAGU------------GGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 26842 0.66 0.449041
Target:  5'- gGCCCGAGUGcuGCucuGCGGucugaCUCG-CGAGCa -3'
miRNA:   3'- -CGGGCUCAU--CG---CGCCc----GAGUgGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 27395 0.66 0.43864
Target:  5'- cGCCgguaCGGGUGGCcaCGGGCggcacaaUCGCCGucGGCg -3'
miRNA:   3'- -CGG----GCUCAUCGc-GCCCG-------AGUGGC--UCG- -5'
18544 3' -60.1 NC_004682.1 + 27991 0.67 0.419172
Target:  5'- -aCCGcGcaccAGCGCGGGCUCcgggaccuucuuCCGGGCc -3'
miRNA:   3'- cgGGCuCa---UCGCGCCCGAGu-----------GGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.