Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 50579 | 0.66 | 0.468295 |
Target: 5'- -aCCGGGUAG-GCaGGGCagguggggUACCGGGUa -3' miRNA: 3'- cgGGCUCAUCgCG-CCCGa-------GUGGCUCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 50005 | 0.71 | 0.226808 |
Target: 5'- uCCUGGGUGGUcaGCGGGCUC-CUG-GCc -3' miRNA: 3'- cGGGCUCAUCG--CGCCCGAGuGGCuCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 49378 | 0.7 | 0.257206 |
Target: 5'- -gCCGGGaAGUuGaCGGGCUCGCCGcuGGCg -3' miRNA: 3'- cgGGCUCaUCG-C-GCCCGAGUGGC--UCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 48986 | 0.66 | 0.430232 |
Target: 5'- gGCCCGAuggGGC-CGGGgagC-CCGAGCa -3' miRNA: 3'- -CGGGCUca-UCGcGCCCga-GuGGCUCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 47690 | 0.68 | 0.359895 |
Target: 5'- uGCCCGAGUuG-GCGGcuGCUgCGCCGccuGCg -3' miRNA: 3'- -CGGGCUCAuCgCGCC--CGA-GUGGCu--CG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 46673 | 0.72 | 0.205258 |
Target: 5'- uCUCGAuGUGGCGCGGGaCgccgaagaugugcagCACCGGGUa -3' miRNA: 3'- cGGGCU-CAUCGCGCCC-Ga--------------GUGGCUCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 46111 | 0.66 | 0.468295 |
Target: 5'- aCUCGAuccacuucGUGGcCGCGucGGCagCGCCGAGCg -3' miRNA: 3'- cGGGCU--------CAUC-GCGC--CCGa-GUGGCUCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 45945 | 1.12 | 0.0002 |
Target: 5'- cGCCCGAGUAGCGCGGGCUCACCGAGCc -3' miRNA: 3'- -CGGGCUCAUCGCGCCCGAGUGGCUCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 45898 | 0.8 | 0.04949 |
Target: 5'- aGCgCGAGUAGCGCacucGGGCUCGCCGucGUc -3' miRNA: 3'- -CGgGCUCAUCGCG----CCCGAGUGGCu-CG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 43429 | 0.66 | 0.47808 |
Target: 5'- cCCCGAucuGCGgGGGCUCgauGCCGuAGg -3' miRNA: 3'- cGGGCUcauCGCgCCCGAG---UGGC-UCg -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 42754 | 0.67 | 0.394048 |
Target: 5'- cGgCUGGGUcAGgacgugccaCGCGGGCagACCGGGCu -3' miRNA: 3'- -CgGGCUCA-UC---------GCGCCCGagUGGCUCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 42263 | 0.67 | 0.394048 |
Target: 5'- gGCCgGGGUagccAGCGCGGuGCau-CCGcAGCa -3' miRNA: 3'- -CGGgCUCA----UCGCGCC-CGaguGGC-UCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 41397 | 0.67 | 0.394048 |
Target: 5'- cGUCCGGGcAGCuGCGucGGUg-ACCGAGCg -3' miRNA: 3'- -CGGGCUCaUCG-CGC--CCGagUGGCUCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 40103 | 0.68 | 0.369078 |
Target: 5'- gGCCCGcAGaggguccuuaagguUGGCGUGGuGCUCcuugccugcggcagcAUCGAGCa -3' miRNA: 3'- -CGGGC-UC--------------AUCGCGCC-CGAG---------------UGGCUCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 39337 | 0.66 | 0.449041 |
Target: 5'- uGCCCGAGcccugAGUG-GGGUcgaaCGCCGGGg -3' miRNA: 3'- -CGGGCUCa----UCGCgCCCGa---GUGGCUCg -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 37133 | 0.72 | 0.199508 |
Target: 5'- -aCCGuGUAGUcgauGCGGGCggugCGCCGAGa -3' miRNA: 3'- cgGGCuCAUCG----CGCCCGa---GUGGCUCg -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 29214 | 0.66 | 0.439579 |
Target: 5'- gGgCCGAGUugAGCcuGCGGGUcaggUCugCGAGa -3' miRNA: 3'- -CgGGCUCA--UCG--CGCCCG----AGugGCUCg -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 28826 | 0.7 | 0.27632 |
Target: 5'- aUCCGAgccagaaguggccGUAGC-CGGGUUCACCGAcGUa -3' miRNA: 3'- cGGGCU-------------CAUCGcGCCCGAGUGGCU-CG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 27991 | 0.67 | 0.419172 |
Target: 5'- -aCCGcGcaccAGCGCGGGCUCcgggaccuucuuCCGGGCc -3' miRNA: 3'- cgGGCuCa---UCGCGCCCGAGu-----------GGCUCG- -5' |
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18544 | 3' | -60.1 | NC_004682.1 | + | 27395 | 0.66 | 0.43864 |
Target: 5'- cGCCgguaCGGGUGGCcaCGGGCggcacaaUCGCCGucGGCg -3' miRNA: 3'- -CGG----GCUCAUCGc-GCCCG-------AGUGGC--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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