miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18544 3' -60.1 NC_004682.1 + 45898 0.8 0.04949
Target:  5'- aGCgCGAGUAGCGCacucGGGCUCGCCGucGUc -3'
miRNA:   3'- -CGgGCUCAUCGCG----CCCGAGUGGCu-CG- -5'
18544 3' -60.1 NC_004682.1 + 25630 0.66 0.439579
Target:  5'- uCCCGucgaAGUAGCGCuguccGGGCgcucCACUGGGg -3'
miRNA:   3'- cGGGC----UCAUCGCG-----CCCGa---GUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 7565 0.66 0.458614
Target:  5'- cUCCGAGgccgGCGGGCgCAUCGAGg -3'
miRNA:   3'- cGGGCUCaucgCGCCCGaGUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 26816 0.66 0.458614
Target:  5'- gGUgCGAGUcccuGGCGCGGGaCUUGaagcgguucaguUCGAGCu -3'
miRNA:   3'- -CGgGCUCA----UCGCGCCC-GAGU------------GGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 475 0.66 0.458614
Target:  5'- gGCCUccaGGGccGCuuccgGCGGcGCUCACCGAcGCg -3'
miRNA:   3'- -CGGG---CUCauCG-----CGCC-CGAGUGGCU-CG- -5'
18544 3' -60.1 NC_004682.1 + 46111 0.66 0.468295
Target:  5'- aCUCGAuccacuucGUGGcCGCGucGGCagCGCCGAGCg -3'
miRNA:   3'- cGGGCU--------CAUC-GCGC--CCGa-GUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 23263 0.66 0.468295
Target:  5'- uGCgCGAGgAGCuGCGGacggaGCgCAUCGAGCg -3'
miRNA:   3'- -CGgGCUCaUCG-CGCC-----CGaGUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 50579 0.66 0.468295
Target:  5'- -aCCGGGUAG-GCaGGGCagguggggUACCGGGUa -3'
miRNA:   3'- cgGGCUCAUCgCG-CCCGa-------GUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 43429 0.66 0.47808
Target:  5'- cCCCGAucuGCGgGGGCUCgauGCCGuAGg -3'
miRNA:   3'- cGGGCUcauCGCgCCCGAG---UGGC-UCg -5'
18544 3' -60.1 NC_004682.1 + 29214 0.66 0.439579
Target:  5'- gGgCCGAGUugAGCcuGCGGGUcaggUCugCGAGa -3'
miRNA:   3'- -CgGGCUCA--UCG--CGCCCG----AGugGCUCg -5'
18544 3' -60.1 NC_004682.1 + 27395 0.66 0.43864
Target:  5'- cGCCgguaCGGGUGGCcaCGGGCggcacaaUCGCCGucGGCg -3'
miRNA:   3'- -CGG----GCUCAUCGc-GCCCG-------AGUGGC--UCG- -5'
18544 3' -60.1 NC_004682.1 + 13643 0.67 0.394048
Target:  5'- -aUCGAGUGGCGUGGaGUgCGgUGGGCg -3'
miRNA:   3'- cgGGCUCAUCGCGCC-CGaGUgGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 46673 0.72 0.205258
Target:  5'- uCUCGAuGUGGCGCGGGaCgccgaagaugugcagCACCGGGUa -3'
miRNA:   3'- cGGGCU-CAUCGCGCCC-Ga--------------GUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 2956 0.71 0.210068
Target:  5'- uUCUGG--GGCGCGGGCggcggCGCUGGGCa -3'
miRNA:   3'- cGGGCUcaUCGCGCCCGa----GUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 20752 0.71 0.215526
Target:  5'- aGCCCG-GUGGUcCGGGUUCauggaucacuACCGGGUg -3'
miRNA:   3'- -CGGGCuCAUCGcGCCCGAG----------UGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 23009 0.68 0.351685
Target:  5'- cGCCCGucGgaaAGCacCGGGCUucaugaCACCGGGCu -3'
miRNA:   3'- -CGGGCu-Ca--UCGc-GCCCGA------GUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 40103 0.68 0.369078
Target:  5'- gGCCCGcAGaggguccuuaagguUGGCGUGGuGCUCcuugccugcggcagcAUCGAGCa -3'
miRNA:   3'- -CGGGC-UC--------------AUCGCGCC-CGAG---------------UGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 1835 0.67 0.376711
Target:  5'- cGCCCGuccgGGCGUcugcucGGGCUCcCCG-GCc -3'
miRNA:   3'- -CGGGCuca-UCGCG------CCCGAGuGGCuCG- -5'
18544 3' -60.1 NC_004682.1 + 42263 0.67 0.394048
Target:  5'- gGCCgGGGUagccAGCGCGGuGCau-CCGcAGCa -3'
miRNA:   3'- -CGGgCUCA----UCGCGCC-CGaguGGC-UCG- -5'
18544 3' -60.1 NC_004682.1 + 42754 0.67 0.394048
Target:  5'- cGgCUGGGUcAGgacgugccaCGCGGGCagACCGGGCu -3'
miRNA:   3'- -CgGGCUCA-UC---------GCGCCCGagUGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.