Results 21 - 38 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 20681 | 0.69 | 0.281789 |
Target: 5'- uGCCCGAGgacaaGGCGCagugGGGCgcucaggagaucgcUCgccugaugGCCGAGCa -3' miRNA: 3'- -CGGGCUCa----UCGCG----CCCG--------------AG--------UGGCUCG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 28826 | 0.7 | 0.27632 |
Target: 5'- aUCCGAgccagaaguggccGUAGC-CGGGUUCACCGAcGUa -3' miRNA: 3'- cGGGCU-------------CAUCGcGCCCGAGUGGCU-CG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 10415 | 0.7 | 0.263672 |
Target: 5'- uCCCGuuGGUGuuccuGCaCGGGCUCACCguGAGCg -3' miRNA: 3'- cGGGC--UCAU-----CGcGCCCGAGUGG--CUCG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 49378 | 0.7 | 0.257206 |
Target: 5'- -gCCGGGaAGUuGaCGGGCUCGCCGcuGGCg -3' miRNA: 3'- cgGGCUCaUCG-C-GCCCGAGUGGC--UCG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 50005 | 0.71 | 0.226808 |
Target: 5'- uCCUGGGUGGUcaGCGGGCUC-CUG-GCc -3' miRNA: 3'- cGGGCUCAUCG--CGCCCGAGuGGCuCG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 37133 | 0.72 | 0.199508 |
Target: 5'- -aCCGuGUAGUcgauGCGGGCggugCGCCGAGa -3' miRNA: 3'- cgGGCuCAUCG----CGCCCGa---GUGGCUCg -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 23649 | 0.72 | 0.179771 |
Target: 5'- cGCCCagcagGAGaccGGCGCGaaguGGgUCGCCGAGCa -3' miRNA: 3'- -CGGG-----CUCa--UCGCGC----CCgAGUGGCUCG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 13993 | 0.69 | 0.283862 |
Target: 5'- cGCCuCGcAGUGGCcUGGGgUCAUCGAGg -3' miRNA: 3'- -CGG-GC-UCAUCGcGCCCgAGUGGCUCg -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 4944 | 0.69 | 0.290858 |
Target: 5'- aGCCCGAGUGcggcuacucGCGCuGGGacgaagccaUCACCGAc- -3' miRNA: 3'- -CGGGCUCAU---------CGCG-CCCg--------AGUGGCUcg -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 47690 | 0.68 | 0.359895 |
Target: 5'- uGCCCGAGUuG-GCGGcuGCUgCGCCGccuGCg -3' miRNA: 3'- -CGGGCUCAuCgCGCC--CGA-GUGGCu--CG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 41397 | 0.67 | 0.394048 |
Target: 5'- cGUCCGGGcAGCuGCGucGGUg-ACCGAGCg -3' miRNA: 3'- -CGGGCUCaUCG-CGC--CCGagUGGCUCG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 8510 | 0.67 | 0.402909 |
Target: 5'- cCCCGA--AGUGCGGaGCUggcucuaccgCACCGAGg -3' miRNA: 3'- cGGGCUcaUCGCGCC-CGA----------GUGGCUCg -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 27991 | 0.67 | 0.419172 |
Target: 5'- -aCCGcGcaccAGCGCGGGCUCcgggaccuucuuCCGGGCc -3' miRNA: 3'- cgGGCuCa---UCGCGCCCGAGu-----------GGCUCG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 8667 | 0.66 | 0.430232 |
Target: 5'- -aCCGAGgagcaGGaCGCGGcCUCgcgggGCCGAGCg -3' miRNA: 3'- cgGGCUCa----UC-GCGCCcGAG-----UGGCUCG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 48986 | 0.66 | 0.430232 |
Target: 5'- gGCCCGAuggGGC-CGGGgagC-CCGAGCa -3' miRNA: 3'- -CGGGCUca-UCGcGCCCga-GuGGCUCG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 26842 | 0.66 | 0.449041 |
Target: 5'- gGCCCGAGUGcuGCucuGCGGucugaCUCG-CGAGCa -3' miRNA: 3'- -CGGGCUCAU--CG---CGCCc----GAGUgGCUCG- -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 39337 | 0.66 | 0.449041 |
Target: 5'- uGCCCGAGcccugAGUG-GGGUcgaaCGCCGGGg -3' miRNA: 3'- -CGGGCUCa----UCGCgCCCGa---GUGGCUCg -5' |
|||||||
18544 | 3' | -60.1 | NC_004682.1 | + | 45945 | 1.12 | 0.0002 |
Target: 5'- cGCCCGAGUAGCGCGGGCUCACCGAGCc -3' miRNA: 3'- -CGGGCUCAUCGCGCCCGAGUGGCUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home