miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18544 3' -60.1 NC_004682.1 + 28826 0.7 0.27632
Target:  5'- aUCCGAgccagaaguggccGUAGC-CGGGUUCACCGAcGUa -3'
miRNA:   3'- cGGGCU-------------CAUCGcGCCCGAGUGGCU-CG- -5'
18544 3' -60.1 NC_004682.1 + 29214 0.66 0.439579
Target:  5'- gGgCCGAGUugAGCcuGCGGGUcaggUCugCGAGa -3'
miRNA:   3'- -CgGGCUCA--UCG--CGCCCG----AGugGCUCg -5'
18544 3' -60.1 NC_004682.1 + 37133 0.72 0.199508
Target:  5'- -aCCGuGUAGUcgauGCGGGCggugCGCCGAGa -3'
miRNA:   3'- cgGGCuCAUCG----CGCCCGa---GUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 39337 0.66 0.449041
Target:  5'- uGCCCGAGcccugAGUG-GGGUcgaaCGCCGGGg -3'
miRNA:   3'- -CGGGCUCa----UCGCgCCCGa---GUGGCUCg -5'
18544 3' -60.1 NC_004682.1 + 40103 0.68 0.369078
Target:  5'- gGCCCGcAGaggguccuuaagguUGGCGUGGuGCUCcuugccugcggcagcAUCGAGCa -3'
miRNA:   3'- -CGGGC-UC--------------AUCGCGCC-CGAG---------------UGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 41397 0.67 0.394048
Target:  5'- cGUCCGGGcAGCuGCGucGGUg-ACCGAGCg -3'
miRNA:   3'- -CGGGCUCaUCG-CGC--CCGagUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 42263 0.67 0.394048
Target:  5'- gGCCgGGGUagccAGCGCGGuGCau-CCGcAGCa -3'
miRNA:   3'- -CGGgCUCA----UCGCGCC-CGaguGGC-UCG- -5'
18544 3' -60.1 NC_004682.1 + 42754 0.67 0.394048
Target:  5'- cGgCUGGGUcAGgacgugccaCGCGGGCagACCGGGCu -3'
miRNA:   3'- -CgGGCUCA-UC---------GCGCCCGagUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 43429 0.66 0.47808
Target:  5'- cCCCGAucuGCGgGGGCUCgauGCCGuAGg -3'
miRNA:   3'- cGGGCUcauCGCgCCCGAG---UGGC-UCg -5'
18544 3' -60.1 NC_004682.1 + 45898 0.8 0.04949
Target:  5'- aGCgCGAGUAGCGCacucGGGCUCGCCGucGUc -3'
miRNA:   3'- -CGgGCUCAUCGCG----CCCGAGUGGCu-CG- -5'
18544 3' -60.1 NC_004682.1 + 45945 1.12 0.0002
Target:  5'- cGCCCGAGUAGCGCGGGCUCACCGAGCc -3'
miRNA:   3'- -CGGGCUCAUCGCGCCCGAGUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 46111 0.66 0.468295
Target:  5'- aCUCGAuccacuucGUGGcCGCGucGGCagCGCCGAGCg -3'
miRNA:   3'- cGGGCU--------CAUC-GCGC--CCGa-GUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 46673 0.72 0.205258
Target:  5'- uCUCGAuGUGGCGCGGGaCgccgaagaugugcagCACCGGGUa -3'
miRNA:   3'- cGGGCU-CAUCGCGCCC-Ga--------------GUGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 47690 0.68 0.359895
Target:  5'- uGCCCGAGUuG-GCGGcuGCUgCGCCGccuGCg -3'
miRNA:   3'- -CGGGCUCAuCgCGCC--CGA-GUGGCu--CG- -5'
18544 3' -60.1 NC_004682.1 + 48986 0.66 0.430232
Target:  5'- gGCCCGAuggGGC-CGGGgagC-CCGAGCa -3'
miRNA:   3'- -CGGGCUca-UCGcGCCCga-GuGGCUCG- -5'
18544 3' -60.1 NC_004682.1 + 49378 0.7 0.257206
Target:  5'- -gCCGGGaAGUuGaCGGGCUCGCCGcuGGCg -3'
miRNA:   3'- cgGGCUCaUCG-C-GCCCGAGUGGC--UCG- -5'
18544 3' -60.1 NC_004682.1 + 50005 0.71 0.226808
Target:  5'- uCCUGGGUGGUcaGCGGGCUC-CUG-GCc -3'
miRNA:   3'- cGGGCUCAUCG--CGCCCGAGuGGCuCG- -5'
18544 3' -60.1 NC_004682.1 + 50579 0.66 0.468295
Target:  5'- -aCCGGGUAG-GCaGGGCagguggggUACCGGGUa -3'
miRNA:   3'- cgGGCUCAUCgCG-CCCGa-------GUGGCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.