Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18550 | 3' | -58 | NC_004682.1 | + | 9194 | 0.66 | 0.579628 |
Target: 5'- -gAUCGACCCGcGCAC-CCgACAGGugauGCg -3' miRNA: 3'- agUAGCUGGGC-CGUGcGG-UGUUCc---CG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 4891 | 0.66 | 0.579628 |
Target: 5'- ----gGGCUCGGUgagcccGCGCUACucGGGCg -3' miRNA: 3'- aguagCUGGGCCG------UGCGGUGuuCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 41329 | 0.66 | 0.578556 |
Target: 5'- cUCugaGACCCGGUgcaGCGUCAgGAucaucucGGGCa -3' miRNA: 3'- -AGuagCUGGGCCG---UGCGGUgUU-------CCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 35726 | 0.66 | 0.568924 |
Target: 5'- cCAUCaGCCggaucagauCGGCGCGCuCACcGGGGa -3' miRNA: 3'- aGUAGcUGG---------GCCGUGCG-GUGuUCCCg -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 5257 | 0.66 | 0.558269 |
Target: 5'- -gAUCGccGCCauGCuCGCCGCGcuGGGGCu -3' miRNA: 3'- agUAGC--UGGgcCGuGCGGUGU--UCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 1722 | 0.66 | 0.558269 |
Target: 5'- -aGUCGGCUcuguccuacguCGGCACGCCGacc-GGCa -3' miRNA: 3'- agUAGCUGG-----------GCCGUGCGGUguucCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 7271 | 0.66 | 0.558269 |
Target: 5'- -gGUCGAUgacaaCGGCAacuacgucuaCCGCGAGGGCa -3' miRNA: 3'- agUAGCUGg----GCCGUgc--------GGUGUUCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 10230 | 0.66 | 0.547672 |
Target: 5'- gCGUCGGCaCgCGGCACuGCaugGCucGGGCc -3' miRNA: 3'- aGUAGCUG-G-GCCGUG-CGg--UGuuCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 33035 | 0.66 | 0.547672 |
Target: 5'- cCAUCuGACCCaucGCG-GUgGCGAGGGCc -3' miRNA: 3'- aGUAG-CUGGGc--CGUgCGgUGUUCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 27391 | 0.66 | 0.547672 |
Target: 5'- cUAUCG--CCGGUACgggugGCCACGGGcGGCa -3' miRNA: 3'- aGUAGCugGGCCGUG-----CGGUGUUC-CCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 46269 | 0.66 | 0.537139 |
Target: 5'- gCA-CGACCUGGgugGCCGCA-GGGCc -3' miRNA: 3'- aGUaGCUGGGCCgugCGGUGUuCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 26187 | 0.66 | 0.537139 |
Target: 5'- gCGUaguuCCCGGCACGCCucgACAuccuGGCa -3' miRNA: 3'- aGUAgcu-GGGCCGUGCGG---UGUuc--CCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 29039 | 0.66 | 0.537139 |
Target: 5'- -gAUCGGCagCGGCAUGCCgaccGCAcGGaGCg -3' miRNA: 3'- agUAGCUGg-GCCGUGCGG----UGUuCC-CG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 16677 | 0.66 | 0.537139 |
Target: 5'- cUCGggCGGCagCGGUgauGgGCCugGAGGGCu -3' miRNA: 3'- -AGUa-GCUGg-GCCG---UgCGGugUUCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 8768 | 0.66 | 0.526677 |
Target: 5'- aCGUgGACCCGGagaAgGcCCGCGAGGa- -3' miRNA: 3'- aGUAgCUGGGCCg--UgC-GGUGUUCCcg -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 48150 | 0.66 | 0.526677 |
Target: 5'- cUCAUgucaGGCCCccaGGCAgaggucgcugcCGCCACAccGGGCg -3' miRNA: 3'- -AGUAg---CUGGG---CCGU-----------GCGGUGUu-CCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 13875 | 0.66 | 0.526677 |
Target: 5'- gCAUCGACgcgCUGGCACaagaucuucggGCCggaucaccugACGAGGGUg -3' miRNA: 3'- aGUAGCUG---GGCCGUG-----------CGG----------UGUUCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 40057 | 0.66 | 0.526677 |
Target: 5'- -aGUCGcACCCGGCGUGCCACu---GCu -3' miRNA: 3'- agUAGC-UGGGCCGUGCGGUGuuccCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 41175 | 0.66 | 0.526677 |
Target: 5'- ---gCGAUCCaGCGCGUCG--AGGGCg -3' miRNA: 3'- aguaGCUGGGcCGUGCGGUguUCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 33939 | 0.67 | 0.515258 |
Target: 5'- gCGcCGACaCCGGCaccgaacGCGCCgaugaGCGAGGGg -3' miRNA: 3'- aGUaGCUG-GGCCG-------UGCGG-----UGUUCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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