miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18550 3' -58 NC_004682.1 + 9194 0.66 0.579628
Target:  5'- -gAUCGACCCGcGCAC-CCgACAGGugauGCg -3'
miRNA:   3'- agUAGCUGGGC-CGUGcGG-UGUUCc---CG- -5'
18550 3' -58 NC_004682.1 + 4891 0.66 0.579628
Target:  5'- ----gGGCUCGGUgagcccGCGCUACucGGGCg -3'
miRNA:   3'- aguagCUGGGCCG------UGCGGUGuuCCCG- -5'
18550 3' -58 NC_004682.1 + 41329 0.66 0.578556
Target:  5'- cUCugaGACCCGGUgcaGCGUCAgGAucaucucGGGCa -3'
miRNA:   3'- -AGuagCUGGGCCG---UGCGGUgUU-------CCCG- -5'
18550 3' -58 NC_004682.1 + 35726 0.66 0.568924
Target:  5'- cCAUCaGCCggaucagauCGGCGCGCuCACcGGGGa -3'
miRNA:   3'- aGUAGcUGG---------GCCGUGCG-GUGuUCCCg -5'
18550 3' -58 NC_004682.1 + 5257 0.66 0.558269
Target:  5'- -gAUCGccGCCauGCuCGCCGCGcuGGGGCu -3'
miRNA:   3'- agUAGC--UGGgcCGuGCGGUGU--UCCCG- -5'
18550 3' -58 NC_004682.1 + 1722 0.66 0.558269
Target:  5'- -aGUCGGCUcuguccuacguCGGCACGCCGacc-GGCa -3'
miRNA:   3'- agUAGCUGG-----------GCCGUGCGGUguucCCG- -5'
18550 3' -58 NC_004682.1 + 7271 0.66 0.558269
Target:  5'- -gGUCGAUgacaaCGGCAacuacgucuaCCGCGAGGGCa -3'
miRNA:   3'- agUAGCUGg----GCCGUgc--------GGUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 33035 0.66 0.547672
Target:  5'- cCAUCuGACCCaucGCG-GUgGCGAGGGCc -3'
miRNA:   3'- aGUAG-CUGGGc--CGUgCGgUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 10230 0.66 0.547672
Target:  5'- gCGUCGGCaCgCGGCACuGCaugGCucGGGCc -3'
miRNA:   3'- aGUAGCUG-G-GCCGUG-CGg--UGuuCCCG- -5'
18550 3' -58 NC_004682.1 + 27391 0.66 0.547672
Target:  5'- cUAUCG--CCGGUACgggugGCCACGGGcGGCa -3'
miRNA:   3'- aGUAGCugGGCCGUG-----CGGUGUUC-CCG- -5'
18550 3' -58 NC_004682.1 + 29039 0.66 0.537139
Target:  5'- -gAUCGGCagCGGCAUGCCgaccGCAcGGaGCg -3'
miRNA:   3'- agUAGCUGg-GCCGUGCGG----UGUuCC-CG- -5'
18550 3' -58 NC_004682.1 + 26187 0.66 0.537139
Target:  5'- gCGUaguuCCCGGCACGCCucgACAuccuGGCa -3'
miRNA:   3'- aGUAgcu-GGGCCGUGCGG---UGUuc--CCG- -5'
18550 3' -58 NC_004682.1 + 46269 0.66 0.537139
Target:  5'- gCA-CGACCUGGgugGCCGCA-GGGCc -3'
miRNA:   3'- aGUaGCUGGGCCgugCGGUGUuCCCG- -5'
18550 3' -58 NC_004682.1 + 16677 0.66 0.537139
Target:  5'- cUCGggCGGCagCGGUgauGgGCCugGAGGGCu -3'
miRNA:   3'- -AGUa-GCUGg-GCCG---UgCGGugUUCCCG- -5'
18550 3' -58 NC_004682.1 + 8768 0.66 0.526677
Target:  5'- aCGUgGACCCGGagaAgGcCCGCGAGGa- -3'
miRNA:   3'- aGUAgCUGGGCCg--UgC-GGUGUUCCcg -5'
18550 3' -58 NC_004682.1 + 48150 0.66 0.526677
Target:  5'- cUCAUgucaGGCCCccaGGCAgaggucgcugcCGCCACAccGGGCg -3'
miRNA:   3'- -AGUAg---CUGGG---CCGU-----------GCGGUGUu-CCCG- -5'
18550 3' -58 NC_004682.1 + 13875 0.66 0.526677
Target:  5'- gCAUCGACgcgCUGGCACaagaucuucggGCCggaucaccugACGAGGGUg -3'
miRNA:   3'- aGUAGCUG---GGCCGUG-----------CGG----------UGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 40057 0.66 0.526677
Target:  5'- -aGUCGcACCCGGCGUGCCACu---GCu -3'
miRNA:   3'- agUAGC-UGGGCCGUGCGGUGuuccCG- -5'
18550 3' -58 NC_004682.1 + 41175 0.66 0.526677
Target:  5'- ---gCGAUCCaGCGCGUCG--AGGGCg -3'
miRNA:   3'- aguaGCUGGGcCGUGCGGUguUCCCG- -5'
18550 3' -58 NC_004682.1 + 33939 0.67 0.515258
Target:  5'- gCGcCGACaCCGGCaccgaacGCGCCgaugaGCGAGGGg -3'
miRNA:   3'- aGUaGCUG-GGCCG-------UGCGG-----UGUUCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.