miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18552 5' -60.8 NC_004682.1 + 42178 1.08 0.000363
Target:  5'- uCUCGCGCCGAACGCGAGGACCGCGCAg -3'
miRNA:   3'- -GAGCGCGGCUUGCGCUCCUGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 41860 0.74 0.126958
Target:  5'- --aGUGCCGGggccagcacagaccaGCGCGAGcuGGCCGCGCAg -3'
miRNA:   3'- gagCGCGGCU---------------UGCGCUC--CUGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 15430 0.74 0.129024
Target:  5'- aUCGCGaaGGACGaCGAGGGCaagcaGCGCGa -3'
miRNA:   3'- gAGCGCggCUUGC-GCUCCUGg----CGCGU- -5'
18552 5' -60.8 NC_004682.1 + 40345 0.72 0.177387
Target:  5'- -cCGCGUCGAGCGCGGucACCGCGa- -3'
miRNA:   3'- gaGCGCGGCUUGCGCUccUGGCGCgu -5'
18552 5' -60.8 NC_004682.1 + 48722 0.71 0.207182
Target:  5'- -cCGCGCUGAaguagaGCGCGAGGuucgacagcuuCUGCGCGu -3'
miRNA:   3'- gaGCGCGGCU------UGCGCUCCu----------GGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 42363 0.71 0.207182
Target:  5'- gCUCGCaGUCGAAgGCGAaucgcuuugucuGG-CCGCGCAu -3'
miRNA:   3'- -GAGCG-CGGCUUgCGCU------------CCuGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 9676 0.71 0.218037
Target:  5'- -aCGCGCUGGAuCGCaAGGcuGCCGCGUAc -3'
miRNA:   3'- gaGCGCGGCUU-GCGcUCC--UGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 42138 0.69 0.259901
Target:  5'- cCUCGCGauGAGCGCGucguGGAUCGCuCGg -3'
miRNA:   3'- -GAGCGCggCUUGCGCu---CCUGGCGcGU- -5'
18552 5' -60.8 NC_004682.1 + 23382 0.69 0.27301
Target:  5'- gUCGCGagGucCGCGAGGGCCGUGa- -3'
miRNA:   3'- gAGCGCggCuuGCGCUCCUGGCGCgu -5'
18552 5' -60.8 NC_004682.1 + 20003 0.69 0.273011
Target:  5'- gUCGCGCCuGGAgGCGcucccgagcaucGGGGCCG-GCAa -3'
miRNA:   3'- gAGCGCGG-CUUgCGC------------UCCUGGCgCGU- -5'
18552 5' -60.8 NC_004682.1 + 18022 0.69 0.279762
Target:  5'- -aCGCGCCgGGACGCGGcuacuuCCGCGCc -3'
miRNA:   3'- gaGCGCGG-CUUGCGCUccu---GGCGCGu -5'
18552 5' -60.8 NC_004682.1 + 36497 0.69 0.293662
Target:  5'- cCUCGCagcgccuccagaGCCGcACGgagguCGAGGACCGcCGCGu -3'
miRNA:   3'- -GAGCG------------CGGCuUGC-----GCUCCUGGC-GCGU- -5'
18552 5' -60.8 NC_004682.1 + 9030 0.69 0.293662
Target:  5'- -aCGCGCUGcuGGCGCGAGucCCGaCGCu -3'
miRNA:   3'- gaGCGCGGC--UUGCGCUCcuGGC-GCGu -5'
18552 5' -60.8 NC_004682.1 + 21663 0.69 0.293662
Target:  5'- aUCGCGCUGAcuACGaCcGGGAUuCGCGCGa -3'
miRNA:   3'- gAGCGCGGCU--UGC-GcUCCUG-GCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 37205 0.69 0.293662
Target:  5'- uCUU-CGCCGcGC-CGAGGGCCGUGCu -3'
miRNA:   3'- -GAGcGCGGCuUGcGCUCCUGGCGCGu -5'
18552 5' -60.8 NC_004682.1 + 49902 0.68 0.320782
Target:  5'- --gGUGCCGAugGCGgugaccuucucgguGGGcACCGCGUc -3'
miRNA:   3'- gagCGCGGCUugCGC--------------UCC-UGGCGCGu -5'
18552 5' -60.8 NC_004682.1 + 29329 0.68 0.323062
Target:  5'- gUCgGUGCCG-ACGU--GGACCGCGUAg -3'
miRNA:   3'- gAG-CGCGGCuUGCGcuCCUGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 20670 0.68 0.323062
Target:  5'- cCUgGCGUCGGuGCcCGAGGACaagGCGCAg -3'
miRNA:   3'- -GAgCGCGGCU-UGcGCUCCUGg--CGCGU- -5'
18552 5' -60.8 NC_004682.1 + 18116 0.68 0.330747
Target:  5'- uUCGCGCaGGGCGCGucGGACauCGCGg -3'
miRNA:   3'- gAGCGCGgCUUGCGCu-CCUGgcGCGU- -5'
18552 5' -60.8 NC_004682.1 + 8668 0.67 0.353788
Target:  5'- cCUCGCGUUcGGCGCGAgacaGGACUuccugaugaguaaGCGCAa -3'
miRNA:   3'- -GAGCGCGGcUUGCGCU----CCUGG-------------CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.