miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18552 5' -60.8 NC_004682.1 + 1304 0.66 0.423934
Target:  5'- --gGCGUCGAGCGCuacuuGGuCCGCGaCAg -3'
miRNA:   3'- gagCGCGGCUUGCGcu---CCuGGCGC-GU- -5'
18552 5' -60.8 NC_004682.1 + 3180 0.67 0.379646
Target:  5'- -gCGgGCCaGGGCGCGGGcaACCGCGUc -3'
miRNA:   3'- gaGCgCGG-CUUGCGCUCc-UGGCGCGu -5'
18552 5' -60.8 NC_004682.1 + 7549 0.66 0.409426
Target:  5'- aUCGcCGCCGAGCGCuuuGAcccGGACCcagagccggacaaguGCGCu -3'
miRNA:   3'- gAGC-GCGGCUUGCG---CU---CCUGG---------------CGCGu -5'
18552 5' -60.8 NC_004682.1 + 8668 0.67 0.353788
Target:  5'- cCUCGCGUUcGGCGCGAgacaGGACUuccugaugaguaaGCGCAa -3'
miRNA:   3'- -GAGCGCGGcUUGCGCU----CCUGG-------------CGCGU- -5'
18552 5' -60.8 NC_004682.1 + 9030 0.69 0.293662
Target:  5'- -aCGCGCUGcuGGCGCGAGucCCGaCGCu -3'
miRNA:   3'- gaGCGCGGC--UUGCGCUCcuGGC-GCGu -5'
18552 5' -60.8 NC_004682.1 + 9676 0.71 0.218037
Target:  5'- -aCGCGCUGGAuCGCaAGGcuGCCGCGUAc -3'
miRNA:   3'- gaGCGCGGCUU-GCGcUCC--UGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 15430 0.74 0.129024
Target:  5'- aUCGCGaaGGACGaCGAGGGCaagcaGCGCGa -3'
miRNA:   3'- gAGCGCggCUUGC-GCUCCUGg----CGCGU- -5'
18552 5' -60.8 NC_004682.1 + 16911 0.66 0.442495
Target:  5'- -cCGCcaaagcagugGCCGAugGagucgauGAGGACUGCGCc -3'
miRNA:   3'- gaGCG----------CGGCUugCg------CUCCUGGCGCGu -5'
18552 5' -60.8 NC_004682.1 + 18022 0.69 0.279762
Target:  5'- -aCGCGCCgGGACGCGGcuacuuCCGCGCc -3'
miRNA:   3'- gaGCGCGG-CUUGCGCUccu---GGCGCGu -5'
18552 5' -60.8 NC_004682.1 + 18116 0.68 0.330747
Target:  5'- uUCGCGCaGGGCGCGucGGACauCGCGg -3'
miRNA:   3'- gAGCGCGgCUUGCGCu-CCUGgcGCGU- -5'
18552 5' -60.8 NC_004682.1 + 18608 0.67 0.379646
Target:  5'- uUCGggagaaCGCCGAGCugaaGCGAaagcuGGCCGCGCAg -3'
miRNA:   3'- gAGC------GCGGCUUG----CGCUc----CUGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 19971 0.66 0.423934
Target:  5'- aUCGC-CCGcAACGCGAcuGCCGCGaCGg -3'
miRNA:   3'- gAGCGcGGC-UUGCGCUccUGGCGC-GU- -5'
18552 5' -60.8 NC_004682.1 + 20003 0.69 0.273011
Target:  5'- gUCGCGCCuGGAgGCGcucccgagcaucGGGGCCG-GCAa -3'
miRNA:   3'- gAGCGCGG-CUUgCGC------------UCCUGGCgCGU- -5'
18552 5' -60.8 NC_004682.1 + 20670 0.68 0.323062
Target:  5'- cCUgGCGUCGGuGCcCGAGGACaagGCGCAg -3'
miRNA:   3'- -GAgCGCGGCU-UGcGCUCCUGg--CGCGU- -5'
18552 5' -60.8 NC_004682.1 + 21663 0.69 0.293662
Target:  5'- aUCGCGCUGAcuACGaCcGGGAUuCGCGCGa -3'
miRNA:   3'- gAGCGCGGCU--UGC-GcUCCUG-GCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 23382 0.69 0.27301
Target:  5'- gUCGCGagGucCGCGAGGGCCGUGa- -3'
miRNA:   3'- gAGCGCggCuuGCGCUCCUGGCGCgu -5'
18552 5' -60.8 NC_004682.1 + 29329 0.68 0.323062
Target:  5'- gUCgGUGCCG-ACGU--GGACCGCGUAg -3'
miRNA:   3'- gAG-CGCGGCuUGCGcuCCUGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 29903 0.67 0.371168
Target:  5'- -cCuCGCCGAACGCGccGAuCCgGCGCAg -3'
miRNA:   3'- gaGcGCGGCUUGCGCucCU-GG-CGCGU- -5'
18552 5' -60.8 NC_004682.1 + 33958 0.66 0.442495
Target:  5'- -aCGCGCCGAugaGCGAGGggagACCaGC-CAg -3'
miRNA:   3'- gaGCGCGGCUug-CGCUCC----UGG-CGcGU- -5'
18552 5' -60.8 NC_004682.1 + 34115 0.66 0.41483
Target:  5'- gUCGuCGCCGAACGCcGAGaacaGCCGgGaCAu -3'
miRNA:   3'- gAGC-GCGGCUUGCG-CUCc---UGGCgC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.