miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18552 5' -60.8 NC_004682.1 + 34179 0.66 0.396988
Target:  5'- -cCGC-CCGAGCGCau--GCCGCGCAg -3'
miRNA:   3'- gaGCGcGGCUUGCGcuccUGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 34665 0.67 0.388253
Target:  5'- uUCGCGCC-AAUGcCGAccucGCCGCGCAu -3'
miRNA:   3'- gAGCGCGGcUUGC-GCUcc--UGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 36238 0.67 0.388254
Target:  5'- gUCGCGguaCUGAGCGgGcAGGACCGgaGCGu -3'
miRNA:   3'- gAGCGC---GGCUUGCgC-UCCUGGCg-CGU- -5'
18552 5' -60.8 NC_004682.1 + 36497 0.69 0.293662
Target:  5'- cCUCGCagcgccuccagaGCCGcACGgagguCGAGGACCGcCGCGu -3'
miRNA:   3'- -GAGCG------------CGGCuUGC-----GCUCCUGGC-GCGU- -5'
18552 5' -60.8 NC_004682.1 + 36978 0.66 0.442495
Target:  5'- -gCGCGUCGAuGCGCG-GGcCUGUGCc -3'
miRNA:   3'- gaGCGCGGCU-UGCGCuCCuGGCGCGu -5'
18552 5' -60.8 NC_004682.1 + 37205 0.69 0.293662
Target:  5'- uCUU-CGCCGcGC-CGAGGGCCGUGCu -3'
miRNA:   3'- -GAGcGCGGCuUGcGCUCCUGGCGCGu -5'
18552 5' -60.8 NC_004682.1 + 40345 0.72 0.177387
Target:  5'- -cCGCGUCGAGCGCGGucACCGCGa- -3'
miRNA:   3'- gaGCGCGGCUUGCGCUccUGGCGCgu -5'
18552 5' -60.8 NC_004682.1 + 41791 0.66 0.433157
Target:  5'- gUCaGCGCUGAaguacaGCGUcGGGACuCGCGCc -3'
miRNA:   3'- gAG-CGCGGCU------UGCGcUCCUG-GCGCGu -5'
18552 5' -60.8 NC_004682.1 + 41860 0.74 0.126958
Target:  5'- --aGUGCCGGggccagcacagaccaGCGCGAGcuGGCCGCGCAg -3'
miRNA:   3'- gagCGCGGCU---------------UGCGCUC--CUGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 42138 0.69 0.259901
Target:  5'- cCUCGCGauGAGCGCGucguGGAUCGCuCGg -3'
miRNA:   3'- -GAGCGCggCUUGCGCu---CCUGGCGcGU- -5'
18552 5' -60.8 NC_004682.1 + 42178 1.08 0.000363
Target:  5'- uCUCGCGCCGAACGCGAGGACCGCGCAg -3'
miRNA:   3'- -GAGCGCGGCUUGCGCUCCUGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 42363 0.71 0.207182
Target:  5'- gCUCGCaGUCGAAgGCGAaucgcuuugucuGG-CCGCGCAu -3'
miRNA:   3'- -GAGCG-CGGCUUgCGCU------------CCuGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 46354 0.66 0.396988
Target:  5'- -gCcCGCCGggUGCGAGGgaacGCCuCGCGg -3'
miRNA:   3'- gaGcGCGGCuuGCGCUCC----UGGcGCGU- -5'
18552 5' -60.8 NC_004682.1 + 48722 0.71 0.207182
Target:  5'- -cCGCGCUGAaguagaGCGCGAGGuucgacagcuuCUGCGCGu -3'
miRNA:   3'- gaGCGCGGCU------UGCGCUCCu----------GGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 49902 0.68 0.320782
Target:  5'- --gGUGCCGAugGCGgugaccuucucgguGGGcACCGCGUc -3'
miRNA:   3'- gagCGCGGCUugCGC--------------UCC-UGGCGCGu -5'
18552 5' -60.8 NC_004682.1 + 49944 0.67 0.362819
Target:  5'- gUUGCGUCGGACGCGuugauccGACCGUuuacGCAc -3'
miRNA:   3'- gAGCGCGGCUUGCGCuc-----CUGGCG----CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.