Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18552 | 5' | -60.8 | NC_004682.1 | + | 21663 | 0.69 | 0.293662 |
Target: 5'- aUCGCGCUGAcuACGaCcGGGAUuCGCGCGa -3' miRNA: 3'- gAGCGCGGCU--UGC-GcUCCUG-GCGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 9030 | 0.69 | 0.293662 |
Target: 5'- -aCGCGCUGcuGGCGCGAGucCCGaCGCu -3' miRNA: 3'- gaGCGCGGC--UUGCGCUCcuGGC-GCGu -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 18022 | 0.69 | 0.279762 |
Target: 5'- -aCGCGCCgGGACGCGGcuacuuCCGCGCc -3' miRNA: 3'- gaGCGCGG-CUUGCGCUccu---GGCGCGu -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 23382 | 0.69 | 0.27301 |
Target: 5'- gUCGCGagGucCGCGAGGGCCGUGa- -3' miRNA: 3'- gAGCGCggCuuGCGCUCCUGGCGCgu -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 42363 | 0.71 | 0.207182 |
Target: 5'- gCUCGCaGUCGAAgGCGAaucgcuuugucuGG-CCGCGCAu -3' miRNA: 3'- -GAGCG-CGGCUUgCGCU------------CCuGGCGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 49944 | 0.67 | 0.362819 |
Target: 5'- gUUGCGUCGGACGCGuugauccGACCGUuuacGCAc -3' miRNA: 3'- gAGCGCGGCUUGCGCuc-----CUGGCG----CGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 18608 | 0.67 | 0.379646 |
Target: 5'- uUCGggagaaCGCCGAGCugaaGCGAaagcuGGCCGCGCAg -3' miRNA: 3'- gAGC------GCGGCUUG----CGCUc----CUGGCGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 34665 | 0.67 | 0.388253 |
Target: 5'- uUCGCGCC-AAUGcCGAccucGCCGCGCAu -3' miRNA: 3'- gAGCGCGGcUUGC-GCUcc--UGGCGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 34179 | 0.66 | 0.396988 |
Target: 5'- -cCGC-CCGAGCGCau--GCCGCGCAg -3' miRNA: 3'- gaGCGcGGCUUGCGcuccUGGCGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 7549 | 0.66 | 0.409426 |
Target: 5'- aUCGcCGCCGAGCGCuuuGAcccGGACCcagagccggacaaguGCGCu -3' miRNA: 3'- gAGC-GCGGCUUGCG---CU---CCUGG---------------CGCGu -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 34115 | 0.66 | 0.41483 |
Target: 5'- gUCGuCGCCGAACGCcGAGaacaGCCGgGaCAu -3' miRNA: 3'- gAGC-GCGGCUUGCG-CUCc---UGGCgC-GU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 1304 | 0.66 | 0.423934 |
Target: 5'- --gGCGUCGAGCGCuacuuGGuCCGCGaCAg -3' miRNA: 3'- gagCGCGGCUUGCGcu---CCuGGCGC-GU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 33958 | 0.66 | 0.442495 |
Target: 5'- -aCGCGCCGAugaGCGAGGggagACCaGC-CAg -3' miRNA: 3'- gaGCGCGGCUug-CGCUCC----UGG-CGcGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 36978 | 0.66 | 0.442495 |
Target: 5'- -gCGCGUCGAuGCGCG-GGcCUGUGCc -3' miRNA: 3'- gaGCGCGGCU-UGCGCuCCuGGCGCGu -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 16911 | 0.66 | 0.442495 |
Target: 5'- -cCGCcaaagcagugGCCGAugGagucgauGAGGACUGCGCc -3' miRNA: 3'- gaGCG----------CGGCUugCg------CUCCUGGCGCGu -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 42178 | 1.08 | 0.000363 |
Target: 5'- uCUCGCGCCGAACGCGAGGACCGCGCAg -3' miRNA: 3'- -GAGCGCGGCUUGCGCUCCUGGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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