miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18552 5' -60.8 NC_004682.1 + 15430 0.74 0.129024
Target:  5'- aUCGCGaaGGACGaCGAGGGCaagcaGCGCGa -3'
miRNA:   3'- gAGCGCggCUUGC-GCUCCUGg----CGCGU- -5'
18552 5' -60.8 NC_004682.1 + 41860 0.74 0.126958
Target:  5'- --aGUGCCGGggccagcacagaccaGCGCGAGcuGGCCGCGCAg -3'
miRNA:   3'- gagCGCGGCU---------------UGCGCUC--CUGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 41791 0.66 0.433157
Target:  5'- gUCaGCGCUGAaguacaGCGUcGGGACuCGCGCc -3'
miRNA:   3'- gAG-CGCGGCU------UGCGcUCCUG-GCGCGu -5'
18552 5' -60.8 NC_004682.1 + 19971 0.66 0.423934
Target:  5'- aUCGC-CCGcAACGCGAcuGCCGCGaCGg -3'
miRNA:   3'- gAGCGcGGC-UUGCGCUccUGGCGC-GU- -5'
18552 5' -60.8 NC_004682.1 + 46354 0.66 0.396988
Target:  5'- -gCcCGCCGggUGCGAGGgaacGCCuCGCGg -3'
miRNA:   3'- gaGcGCGGCuuGCGCUCC----UGGcGCGU- -5'
18552 5' -60.8 NC_004682.1 + 36238 0.67 0.388254
Target:  5'- gUCGCGguaCUGAGCGgGcAGGACCGgaGCGu -3'
miRNA:   3'- gAGCGC---GGCUUGCgC-UCCUGGCg-CGU- -5'
18552 5' -60.8 NC_004682.1 + 3180 0.67 0.379646
Target:  5'- -gCGgGCCaGGGCGCGGGcaACCGCGUc -3'
miRNA:   3'- gaGCgCGG-CUUGCGCUCc-UGGCGCGu -5'
18552 5' -60.8 NC_004682.1 + 29903 0.67 0.371168
Target:  5'- -cCuCGCCGAACGCGccGAuCCgGCGCAg -3'
miRNA:   3'- gaGcGCGGCUUGCGCucCU-GG-CGCGU- -5'
18552 5' -60.8 NC_004682.1 + 8668 0.67 0.353788
Target:  5'- cCUCGCGUUcGGCGCGAgacaGGACUuccugaugaguaaGCGCAa -3'
miRNA:   3'- -GAGCGCGGcUUGCGCU----CCUGG-------------CGCGU- -5'
18552 5' -60.8 NC_004682.1 + 18116 0.68 0.330747
Target:  5'- uUCGCGCaGGGCGCGucGGACauCGCGg -3'
miRNA:   3'- gAGCGCGgCUUGCGCu-CCUGgcGCGU- -5'
18552 5' -60.8 NC_004682.1 + 36497 0.69 0.293662
Target:  5'- cCUCGCagcgccuccagaGCCGcACGgagguCGAGGACCGcCGCGu -3'
miRNA:   3'- -GAGCG------------CGGCuUGC-----GCUCCUGGC-GCGU- -5'
18552 5' -60.8 NC_004682.1 + 37205 0.69 0.293662
Target:  5'- uCUU-CGCCGcGC-CGAGGGCCGUGCu -3'
miRNA:   3'- -GAGcGCGGCuUGcGCUCCUGGCGCGu -5'
18552 5' -60.8 NC_004682.1 + 20003 0.69 0.273011
Target:  5'- gUCGCGCCuGGAgGCGcucccgagcaucGGGGCCG-GCAa -3'
miRNA:   3'- gAGCGCGG-CUUgCGC------------UCCUGGCgCGU- -5'
18552 5' -60.8 NC_004682.1 + 42138 0.69 0.259901
Target:  5'- cCUCGCGauGAGCGCGucguGGAUCGCuCGg -3'
miRNA:   3'- -GAGCGCggCUUGCGCu---CCUGGCGcGU- -5'
18552 5' -60.8 NC_004682.1 + 9676 0.71 0.218037
Target:  5'- -aCGCGCUGGAuCGCaAGGcuGCCGCGUAc -3'
miRNA:   3'- gaGCGCGGCUU-GCGcUCC--UGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 48722 0.71 0.207182
Target:  5'- -cCGCGCUGAaguagaGCGCGAGGuucgacagcuuCUGCGCGu -3'
miRNA:   3'- gaGCGCGGCU------UGCGCUCCu----------GGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 40345 0.72 0.177387
Target:  5'- -cCGCGUCGAGCGCGGucACCGCGa- -3'
miRNA:   3'- gaGCGCGGCUUGCGCUccUGGCGCgu -5'
18552 5' -60.8 NC_004682.1 + 29329 0.68 0.323062
Target:  5'- gUCgGUGCCG-ACGU--GGACCGCGUAg -3'
miRNA:   3'- gAG-CGCGGCuUGCGcuCCUGGCGCGU- -5'
18552 5' -60.8 NC_004682.1 + 49944 0.67 0.362819
Target:  5'- gUUGCGUCGGACGCGuugauccGACCGUuuacGCAc -3'
miRNA:   3'- gAGCGCGGCUUGCGCuc-----CUGGCG----CGU- -5'
18552 5' -60.8 NC_004682.1 + 20670 0.68 0.323062
Target:  5'- cCUgGCGUCGGuGCcCGAGGACaagGCGCAg -3'
miRNA:   3'- -GAgCGCGGCU-UGcGCUCCUGg--CGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.