Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18554 | 3' | -53 | NC_004682.1 | + | 25628 | 0.66 | 0.854772 |
Target: 5'- -gGUCCcguCGAAGUagcgcugUCCGGGcGCUCCa- -3' miRNA: 3'- cgCAGGu--GCUUCA-------AGGCUU-CGAGGcg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 23218 | 0.74 | 0.400949 |
Target: 5'- cCGUCCGugaGggGUUCCGcGAGaUCCGCa -3' miRNA: 3'- cGCAGGUg--CuuCAAGGC-UUCgAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 23057 | 0.69 | 0.65279 |
Target: 5'- uGCGUUCGCGAuGUgcaGuGGUUCCGCu -3' miRNA: 3'- -CGCAGGUGCUuCAaggCuUCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 22831 | 0.67 | 0.771147 |
Target: 5'- aGCGgcCCGgaaGAAGgucCCGGAGC-CCGCg -3' miRNA: 3'- -CGCa-GGUg--CUUCaa-GGCUUCGaGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 22354 | 0.68 | 0.750485 |
Target: 5'- gGUGUCgGCGcGGUgacccaUCCGggGUUCCu- -3' miRNA: 3'- -CGCAGgUGCuUCA------AGGCuuCGAGGcg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 22240 | 0.66 | 0.84706 |
Target: 5'- --cUCUACGggGggaggCCGGAucGCUCCGg -3' miRNA: 3'- cgcAGGUGCuuCaa---GGCUU--CGAGGCg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 19049 | 0.7 | 0.586253 |
Target: 5'- cGCGUCguggagaACGAGGaugaccUCUGggGCUuCCGCg -3' miRNA: 3'- -CGCAGg------UGCUUCa-----AGGCuuCGA-GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 18958 | 0.66 | 0.838273 |
Target: 5'- gGCG-CCAagGAGGggCUGAAGUUCgGUg -3' miRNA: 3'- -CGCaGGUg-CUUCaaGGCUUCGAGgCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 17462 | 0.73 | 0.469025 |
Target: 5'- uGCGcCCACGgcGagaUGAAGUUCCGCu -3' miRNA: 3'- -CGCaGGUGCuuCaagGCUUCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 17332 | 0.72 | 0.521085 |
Target: 5'- gGCGUUCGCGAAGcuggccCCGcAGCaggCCGCu -3' miRNA: 3'- -CGCAGGUGCUUCaa----GGCuUCGa--GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 15286 | 0.66 | 0.810627 |
Target: 5'- uCGuUCCGCGAAGaggCCGAccgcgAGUUCgCGCc -3' miRNA: 3'- cGC-AGGUGCUUCaa-GGCU-----UCGAG-GCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 14090 | 0.73 | 0.469025 |
Target: 5'- -gGUCUACGAGGaUagGAGGUUCCGCa -3' miRNA: 3'- cgCAGGUGCUUCaAggCUUCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 13115 | 0.7 | 0.597298 |
Target: 5'- aGCGcaUCUACGAGGagcccgUCGAGGCUCCa- -3' miRNA: 3'- -CGC--AGGUGCUUCaa----GGCUUCGAGGcg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 12682 | 0.69 | 0.668296 |
Target: 5'- gGCGUCCACGAcuacgUCCaccagggggacgaguGAAcgaggacaacguGCUCCGCg -3' miRNA: 3'- -CGCAGGUGCUuca--AGG---------------CUU------------CGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 10870 | 0.66 | 0.84706 |
Target: 5'- uCGUUCGCcGGGUUCCGGuucguccgugcGGCUUaCGCg -3' miRNA: 3'- cGCAGGUGcUUCAAGGCU-----------UCGAG-GCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 10364 | 0.67 | 0.781264 |
Target: 5'- uCGUCCuCGAugacgGGUUCCGAgucgGGgUCuCGCa -3' miRNA: 3'- cGCAGGuGCU-----UCAAGGCU----UCgAG-GCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 9409 | 0.66 | 0.855617 |
Target: 5'- aCGgcaCgACGGAGaucaccCCGGAGCUUCGCu -3' miRNA: 3'- cGCa--GgUGCUUCaa----GGCUUCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 9158 | 0.69 | 0.663871 |
Target: 5'- gGCGaCCugGggGacgCUGAggacgAGUUCCGCg -3' miRNA: 3'- -CGCaGGugCuuCaa-GGCU-----UCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 8055 | 0.7 | 0.641689 |
Target: 5'- aCGUCCACauGGgaCCGAAGC-CCGg -3' miRNA: 3'- cGCAGGUGcuUCaaGGCUUCGaGGCg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 7499 | 0.66 | 0.84706 |
Target: 5'- aGUGgccCCGCGAgagGGUcgCggaGAAGUUCCGCg -3' miRNA: 3'- -CGCa--GGUGCU---UCAa-Gg--CUUCGAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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