Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18554 | 3' | -53 | NC_004682.1 | + | 22354 | 0.68 | 0.750485 |
Target: 5'- gGUGUCgGCGcGGUgacccaUCCGggGUUCCu- -3' miRNA: 3'- -CGCAGgUGCuUCA------AGGCuuCGAGGcg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 1929 | 0.68 | 0.729332 |
Target: 5'- gGCGUUCgucaaggacuGCGAcaagcgcaaGGcUCCGAAGCuguUCCGCa -3' miRNA: 3'- -CGCAGG----------UGCU---------UCaAGGCUUCG---AGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 29260 | 0.68 | 0.71212 |
Target: 5'- gGCGgCgAUGAAGUcggcaucggccucgcUCUGGAGgUCCGCa -3' miRNA: 3'- -CGCaGgUGCUUCA---------------AGGCUUCgAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 27391 | 0.69 | 0.690322 |
Target: 5'- gGCGUCCuCGGugaaguccuggccguAGUUCC-AGGCcCCGCc -3' miRNA: 3'- -CGCAGGuGCU---------------UCAAGGcUUCGaGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 26448 | 0.69 | 0.685932 |
Target: 5'- aGCGUCCAgcacCGucGUgCCGAucuuGCUcCCGCc -3' miRNA: 3'- -CGCAGGU----GCuuCAaGGCUu---CGA-GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 12682 | 0.69 | 0.668296 |
Target: 5'- gGCGUCCACGAcuacgUCCaccagggggacgaguGAAcgaggacaacguGCUCCGCg -3' miRNA: 3'- -CGCAGGUGCUuca--AGG---------------CUU------------CGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 2065 | 0.69 | 0.663871 |
Target: 5'- -gGUCCGC-AGGgUCCGAccGGC-CCGCa -3' miRNA: 3'- cgCAGGUGcUUCaAGGCU--UCGaGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 9158 | 0.69 | 0.663871 |
Target: 5'- gGCGaCCugGggGacgCUGAggacgAGUUCCGCg -3' miRNA: 3'- -CGCaGGugCuuCaa-GGCU-----UCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 2110 | 0.69 | 0.663871 |
Target: 5'- -gGUCCGCGAGGguucaCCGGAGaagCCGg -3' miRNA: 3'- cgCAGGUGCUUCaa---GGCUUCga-GGCg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 23057 | 0.69 | 0.65279 |
Target: 5'- uGCGUUCGCGAuGUgcaGuGGUUCCGCu -3' miRNA: 3'- -CGCAGGUGCUuCAaggCuUCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 8055 | 0.7 | 0.641689 |
Target: 5'- aCGUCCACauGGgaCCGAAGC-CCGg -3' miRNA: 3'- cGCAGGUGcuUCaaGGCUUCGaGGCg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 26251 | 0.7 | 0.641689 |
Target: 5'- cCGUCCGCGAGcUUCCGGugGGUgaaCUGCu -3' miRNA: 3'- cGCAGGUGCUUcAAGGCU--UCGa--GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 41409 | 0.7 | 0.619471 |
Target: 5'- uGCGUCggugaccgaGCGAAGcUCCGggGUgaucUCCGUc -3' miRNA: 3'- -CGCAGg--------UGCUUCaAGGCuuCG----AGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 29083 | 0.7 | 0.612811 |
Target: 5'- aGCGUCCugccgggagaugucgGCGggGUcggcUUCGA-GCUUCGCc -3' miRNA: 3'- -CGCAGG---------------UGCuuCA----AGGCUuCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 13115 | 0.7 | 0.597298 |
Target: 5'- aGCGcaUCUACGAGGagcccgUCGAGGCUCCa- -3' miRNA: 3'- -CGC--AGGUGCUUCaa----GGCUUCGAGGcg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 3561 | 0.7 | 0.597298 |
Target: 5'- gGCGcuggCCGaGGAGaUCCGAGGCUugccCCGCg -3' miRNA: 3'- -CGCa---GGUgCUUCaAGGCUUCGA----GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 19049 | 0.7 | 0.586253 |
Target: 5'- cGCGUCguggagaACGAGGaugaccUCUGggGCUuCCGCg -3' miRNA: 3'- -CGCAGg------UGCUUCa-----AGGCuuCGA-GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 32314 | 0.71 | 0.553384 |
Target: 5'- gGUGUCCGCGAGcgaggCCaucuGGCUCUGCa -3' miRNA: 3'- -CGCAGGUGCUUcaa--GGcu--UCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 37899 | 0.71 | 0.542544 |
Target: 5'- aUGUCCGCGAAGUUCUcucGCgggugCCGUa -3' miRNA: 3'- cGCAGGUGCUUCAAGGcuuCGa----GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 4731 | 0.72 | 0.52215 |
Target: 5'- cGCGgCCACGAAGUggaucgaguaccacgCCGAAGCcgacgaCUGCg -3' miRNA: 3'- -CGCaGGUGCUUCAa--------------GGCUUCGa-----GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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