miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 46128 0.71 0.274442
Target:  5'- gCCGcGUCgGCaGCGCCGAGcgacaGCaGCACCg -3'
miRNA:   3'- -GGC-CAGgUGcUGCGGCUC-----UGcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 27396 0.71 0.274442
Target:  5'- gCCGGUaCGgGugGCCacGGGCGGCACa -3'
miRNA:   3'- -GGCCAgGUgCugCGGc-UCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 13852 0.71 0.281171
Target:  5'- aUGGUCagCACGucaAgGCCGAGACGGUuCCg -3'
miRNA:   3'- gGCCAG--GUGC---UgCGGCUCUGCCGuGG- -5'
18559 3' -59.2 NC_004682.1 + 41973 0.71 0.288029
Target:  5'- aCCGuGacgcCUACGGCGUCGGGcCGGCGCUc -3'
miRNA:   3'- -GGC-Ca---GGUGCUGCGGCUCuGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 26384 0.71 0.301422
Target:  5'- cCUGGaucugcuUCCACGuCGCCGGGucgaacgucgGCGGgGCCa -3'
miRNA:   3'- -GGCC-------AGGUGCuGCGGCUC----------UGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 7205 0.7 0.309393
Target:  5'- -aGGUCauCugGAuCGCCccuGACGGCACCc -3'
miRNA:   3'- ggCCAG--GugCU-GCGGcu-CUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 14128 0.7 0.319768
Target:  5'- cCCGcGUCCAgGcCGUCGuccucccgauccuccGGGCGGCGCUg -3'
miRNA:   3'- -GGC-CAGGUgCuGCGGC---------------UCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 13574 0.7 0.321271
Target:  5'- aCCGGgcugguugaccacCCACGGCcaCCGuGGCGGCAUCc -3'
miRNA:   3'- -GGCCa------------GGUGCUGc-GGCuCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 9561 0.7 0.324294
Target:  5'- aCCGG-CCA-GACGCUGuucGACGcGUACCu -3'
miRNA:   3'- -GGCCaGGUgCUGCGGCu--CUGC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 49899 0.7 0.324294
Target:  5'- gCCGGUgCCgAUGGCGgUGAccuucucgGugGGCACCg -3'
miRNA:   3'- -GGCCA-GG-UGCUGCgGCU--------CugCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 38838 0.7 0.324294
Target:  5'- aCGGcUUguCGAUGCCGuGGAUGGCAgCCg -3'
miRNA:   3'- gGCC-AGguGCUGCGGC-UCUGCCGU-GG- -5'
18559 3' -59.2 NC_004682.1 + 17685 0.7 0.331943
Target:  5'- aUCGG--CACGACGCUGAccACGGCGCUg -3'
miRNA:   3'- -GGCCagGUGCUGCGGCUc-UGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 14259 0.7 0.331943
Target:  5'- -aGGUCCagaccuACGACuCCGAcGGCGGCaaGCCg -3'
miRNA:   3'- ggCCAGG------UGCUGcGGCU-CUGCCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 10627 0.69 0.36385
Target:  5'- gUCGG-CCACucgaugGGCGgCGGGAUGGuCGCCg -3'
miRNA:   3'- -GGCCaGGUG------CUGCgGCUCUGCC-GUGG- -5'
18559 3' -59.2 NC_004682.1 + 48604 0.69 0.372152
Target:  5'- uCCGGgcaCCGCGugGCguuCGGGAaCuGCGCCu -3'
miRNA:   3'- -GGCCa--GGUGCugCG---GCUCU-GcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 14364 0.69 0.372152
Target:  5'- gCGcUCUACGACGCUGuGAa-GCACCa -3'
miRNA:   3'- gGCcAGGUGCUGCGGCuCUgcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 17326 0.69 0.380582
Target:  5'- aCCgGGUCUcgcagaACGGCGUCauGGACGGCGCg -3'
miRNA:   3'- -GG-CCAGG------UGCUGCGGc-UCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 5296 0.69 0.389138
Target:  5'- gCCGGcCC-CGGCGC--AGGCGGguCCa -3'
miRNA:   3'- -GGCCaGGuGCUGCGgcUCUGCCguGG- -5'
18559 3' -59.2 NC_004682.1 + 11796 0.69 0.389138
Target:  5'- aCCGGUgCCGucuCGGCGUCGuGGAcCGGCgagGCCg -3'
miRNA:   3'- -GGCCA-GGU---GCUGCGGC-UCU-GCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 12652 0.69 0.389138
Target:  5'- cCCGGUCCuucuguCGACuCCGuAGGaGGCACa -3'
miRNA:   3'- -GGCCAGGu-----GCUGcGGC-UCUgCCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.