miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 50397 0.67 0.465741
Target:  5'- aCCGGcCCugGAgGCCGGuucuaugucaaguauGAcCGGC-CCu -3'
miRNA:   3'- -GGCCaGGugCUgCGGCU---------------CU-GCCGuGG- -5'
18559 3' -59.2 NC_004682.1 + 49899 0.7 0.324294
Target:  5'- gCCGGUgCCgAUGGCGgUGAccuucucgGugGGCACCg -3'
miRNA:   3'- -GGCCA-GG-UGCUGCgGCU--------CugCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 48604 0.69 0.372152
Target:  5'- uCCGGgcaCCGCGugGCguuCGGGAaCuGCGCCu -3'
miRNA:   3'- -GGCCa--GGUGCugCG---GCUCU-GcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 46128 0.71 0.274442
Target:  5'- gCCGcGUCgGCaGCGCCGAGcgacaGCaGCACCg -3'
miRNA:   3'- -GGC-CAGgUGcUGCGGCUC-----UGcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 44404 0.71 0.274442
Target:  5'- cCCGGuUCCGCuACGCgGAcGACGGgAUCg -3'
miRNA:   3'- -GGCC-AGGUGcUGCGgCU-CUGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 44295 0.68 0.406625
Target:  5'- uCgGGUCCAUGAUGUCGuGcuUGaGCACCu -3'
miRNA:   3'- -GgCCAGGUGCUGCGGCuCu-GC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 43520 0.66 0.572207
Target:  5'- aCgGGUCCuuGccccaGCCcuuGAGGCGGCGCa -3'
miRNA:   3'- -GgCCAGGugCug---CGG---CUCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 42468 0.66 0.572207
Target:  5'- aCUGGUCgACGuACGCCucGAacuccuucacguCGGCGCg -3'
miRNA:   3'- -GGCCAGgUGC-UGCGGcuCU------------GCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 41973 0.71 0.288029
Target:  5'- aCCGuGacgcCUACGGCGUCGGGcCGGCGCUc -3'
miRNA:   3'- -GGC-Ca---GGUGCUGCGGCUCuGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 41879 0.68 0.406625
Target:  5'- gCCGGaagcccucaagcUCCugGcGCGCUGcGAUGGCGCg -3'
miRNA:   3'- -GGCC------------AGGugC-UGCGGCuCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 40788 0.68 0.406625
Target:  5'- aUCGGUCUGCGAUGUCGucagcccccCGaGCGCCa -3'
miRNA:   3'- -GGCCAGGUGCUGCGGCucu------GC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 40337 0.75 0.165537
Target:  5'- gUGGUUCACcGCGUCGAGcGCGGuCACCg -3'
miRNA:   3'- gGCCAGGUGcUGCGGCUC-UGCC-GUGG- -5'
18559 3' -59.2 NC_004682.1 + 39039 1.13 0.000257
Target:  5'- gCCGGUCCACGACGCCGAGACGGCACCg -3'
miRNA:   3'- -GGCCAGGUGCUGCGGCUCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 38838 0.7 0.324294
Target:  5'- aCGGcUUguCGAUGCCGuGGAUGGCAgCCg -3'
miRNA:   3'- gGCC-AGguGCUGCGGC-UCUGCCGU-GG- -5'
18559 3' -59.2 NC_004682.1 + 38488 0.66 0.531043
Target:  5'- gUCGc-CCAUGACGCCGAccacGCGGUugCc -3'
miRNA:   3'- -GGCcaGGUGCUGCGGCUc---UGCCGugG- -5'
18559 3' -59.2 NC_004682.1 + 36721 0.66 0.561832
Target:  5'- aCGG-CCugGACGCgGGGcaucugggccauGCGGaACCu -3'
miRNA:   3'- gGCCaGGugCUGCGgCUC------------UGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 35955 0.66 0.572207
Target:  5'- gCCGaacacaCCagGCGugGUCGAGGCGuucGCGCCg -3'
miRNA:   3'- -GGCca----GG--UGCugCGGCUCUGC---CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 35850 0.66 0.541243
Target:  5'- cCCGG-CgCAcCGACGCCuuGugGGCguggaaGCCg -3'
miRNA:   3'- -GGCCaG-GU-GCUGCGGcuCugCCG------UGG- -5'
18559 3' -59.2 NC_004682.1 + 34100 0.67 0.500888
Target:  5'- aCCGGccuucUCCGCGucgucgccgaACGCCGAGAacagcCGGgACa -3'
miRNA:   3'- -GGCC-----AGGUGC----------UGCGGCUCU-----GCCgUGg -5'
18559 3' -59.2 NC_004682.1 + 33927 0.73 0.214119
Target:  5'- gCCGaGgCCACaGCGCCGAcacCGGCACCg -3'
miRNA:   3'- -GGC-CaGGUGcUGCGGCUcu-GCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.