miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18562 5' -54.6 NC_004682.1 + 50304 0.66 0.777593
Target:  5'- -cCGGUCACugGUUGAccAGGACaacgAGACCa- -3'
miRNA:   3'- caGCCAGUG--CAGCU--UCCUG----UCUGGcg -5'
18562 5' -54.6 NC_004682.1 + 38596 0.66 0.767537
Target:  5'- cUCGGUgUAgGUCGAcuccacgaacagAGGAC-GACCGUu -3'
miRNA:   3'- cAGCCA-GUgCAGCU------------UCCUGuCUGGCG- -5'
18562 5' -54.6 NC_004682.1 + 13521 0.66 0.767537
Target:  5'- -cCGG-UACGUCGGcacGACGGGCCGa -3'
miRNA:   3'- caGCCaGUGCAGCUuc-CUGUCUGGCg -5'
18562 5' -54.6 NC_004682.1 + 1738 0.66 0.767537
Target:  5'- cGUCGG-CACGcCGAccGGCAaGAUCGUc -3'
miRNA:   3'- -CAGCCaGUGCaGCUucCUGU-CUGGCG- -5'
18562 5' -54.6 NC_004682.1 + 32834 0.66 0.757341
Target:  5'- -cCGG-CGCGUCGAucaGAUccuuGACCGCu -3'
miRNA:   3'- caGCCaGUGCAGCUuc-CUGu---CUGGCG- -5'
18562 5' -54.6 NC_004682.1 + 31164 0.66 0.757341
Target:  5'- aUCGG-CugGUCGGucGGAuuCAGACCa- -3'
miRNA:   3'- cAGCCaGugCAGCUu-CCU--GUCUGGcg -5'
18562 5' -54.6 NC_004682.1 + 18271 0.66 0.756314
Target:  5'- uGUCGGUgcCGCGcagagggUCGucGGAgCAGuCCGCa -3'
miRNA:   3'- -CAGCCA--GUGC-------AGCuuCCU-GUCuGGCG- -5'
18562 5' -54.6 NC_004682.1 + 2378 0.66 0.754257
Target:  5'- -cCGGUCc---CGAAGGGCcacagggugagacgGGACCGCa -3'
miRNA:   3'- caGCCAGugcaGCUUCCUG--------------UCUGGCG- -5'
18562 5' -54.6 NC_004682.1 + 4841 0.66 0.747018
Target:  5'- aUCGGcaACGUCGAccAGGugAaGuCCGCg -3'
miRNA:   3'- cAGCCagUGCAGCU--UCCugU-CuGGCG- -5'
18562 5' -54.6 NC_004682.1 + 27004 0.66 0.747018
Target:  5'- cUUGGUCAgGUCGGu-GACcgcauugcccAGGCCGCu -3'
miRNA:   3'- cAGCCAGUgCAGCUucCUG----------UCUGGCG- -5'
18562 5' -54.6 NC_004682.1 + 22230 0.66 0.74598
Target:  5'- uUCGGUCuuccucuACGgggGGAGGcCGGAUCGCu -3'
miRNA:   3'- cAGCCAG-------UGCag-CUUCCuGUCUGGCG- -5'
18562 5' -54.6 NC_004682.1 + 6308 0.66 0.736579
Target:  5'- -aCGGUcCACGgcaccGGACAGGCCGa -3'
miRNA:   3'- caGCCA-GUGCagcuuCCUGUCUGGCg -5'
18562 5' -54.6 NC_004682.1 + 3121 0.67 0.726036
Target:  5'- -cCGGUUACGggUCGAucacuGGcGCAGGCgGCg -3'
miRNA:   3'- caGCCAGUGC--AGCUu----CC-UGUCUGgCG- -5'
18562 5' -54.6 NC_004682.1 + 32106 0.67 0.726036
Target:  5'- -gCGGgguUCACGUCGAAuGACu--CCGCg -3'
miRNA:   3'- caGCC---AGUGCAGCUUcCUGucuGGCG- -5'
18562 5' -54.6 NC_004682.1 + 30264 0.67 0.693891
Target:  5'- -cCGGUCACGUCGcgaGACguGGACUGg -3'
miRNA:   3'- caGCCAGUGCAGCuucCUG--UCUGGCg -5'
18562 5' -54.6 NC_004682.1 + 3043 0.67 0.693891
Target:  5'- -cCGG-CACuGUCGGAcaaGGCAGGCCGUc -3'
miRNA:   3'- caGCCaGUG-CAGCUUc--CUGUCUGGCG- -5'
18562 5' -54.6 NC_004682.1 + 34567 0.67 0.693891
Target:  5'- gGUCGGuguUCACaUCGAcGGugAcACCGCg -3'
miRNA:   3'- -CAGCC---AGUGcAGCUuCCugUcUGGCG- -5'
18562 5' -54.6 NC_004682.1 + 30867 0.67 0.672145
Target:  5'- cGUCGcggcaGUCGCGUUGc-GGGCGauGGCCGCu -3'
miRNA:   3'- -CAGC-----CAGUGCAGCuuCCUGU--CUGGCG- -5'
18562 5' -54.6 NC_004682.1 + 49109 0.68 0.66121
Target:  5'- -cCGGUCgGCGUgcCGAcguAGGACAGAgCCGa -3'
miRNA:   3'- caGCCAG-UGCA--GCU---UCCUGUCU-GGCg -5'
18562 5' -54.6 NC_004682.1 + 40921 0.69 0.59539
Target:  5'- -gCGGcgUACGUCGgcGucGACGGAUCGCg -3'
miRNA:   3'- caGCCa-GUGCAGCuuC--CUGUCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.