miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18564 3' -52.6 NC_004682.1 + 50169 0.66 0.865053
Target:  5'- gUCGUCACCacgacggauGUggucgaccucggucgCCugGGUGagGCAACCGGa -3'
miRNA:   3'- -AGCAGUGG---------CA---------------GGugCUAC--UGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 13413 0.66 0.861749
Target:  5'- cCGuUCGgCaUCCACGAaGGCAACCAc -3'
miRNA:   3'- aGC-AGUgGcAGGUGCUaCUGUUGGUc -5'
18564 3' -52.6 NC_004682.1 + 23127 0.66 0.861749
Target:  5'- --aUCACCGUCa--GGUGaguuGCGGCCAGg -3'
miRNA:   3'- agcAGUGGCAGgugCUAC----UGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 20195 0.66 0.853317
Target:  5'- gCGUC-CUGgCCGCGcugucgGGCGACCGGa -3'
miRNA:   3'- aGCAGuGGCaGGUGCua----CUGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 37248 0.66 0.853317
Target:  5'- cCGgauGCCG-CCACGGUGGCcguggguggucAACCAGc -3'
miRNA:   3'- aGCag-UGGCaGGUGCUACUG-----------UUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 13433 0.66 0.853317
Target:  5'- gUCGUCACCGaCgAgGAcGGCAAcacCCAGa -3'
miRNA:   3'- -AGCAGUGGCaGgUgCUaCUGUU---GGUC- -5'
18564 3' -52.6 NC_004682.1 + 29265 0.66 0.853317
Target:  5'- aUCGacUCACCGcccgCCACGAagGACGuAUCAGu -3'
miRNA:   3'- -AGC--AGUGGCa---GGUGCUa-CUGU-UGGUC- -5'
18564 3' -52.6 NC_004682.1 + 41551 0.66 0.844647
Target:  5'- -gGUCA-CGUUguCGAUGACcACCAGc -3'
miRNA:   3'- agCAGUgGCAGguGCUACUGuUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 42760 0.66 0.835746
Target:  5'- -gGUCAggaCGUgCCACGcgGGCAgACCGGg -3'
miRNA:   3'- agCAGUg--GCA-GGUGCuaCUGU-UGGUC- -5'
18564 3' -52.6 NC_004682.1 + 22135 0.66 0.835746
Target:  5'- uUCGUCccGCCGccgCCGCGAgugGGCGGCa-- -3'
miRNA:   3'- -AGCAG--UGGCa--GGUGCUa--CUGUUGguc -5'
18564 3' -52.6 NC_004682.1 + 34976 0.66 0.835746
Target:  5'- cUCG-CACCGcgUUgACGAUuGCGACCAGc -3'
miRNA:   3'- -AGCaGUGGC--AGgUGCUAcUGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 6960 0.66 0.826625
Target:  5'- ---aCACCGUCCugGAgGAguACCGc -3'
miRNA:   3'- agcaGUGGCAGGugCUaCUguUGGUc -5'
18564 3' -52.6 NC_004682.1 + 46186 0.66 0.826625
Target:  5'- gUCGUCAccCCGUCCGgGGUucucGAUGGCCu- -3'
miRNA:   3'- -AGCAGU--GGCAGGUgCUA----CUGUUGGuc -5'
18564 3' -52.6 NC_004682.1 + 43545 0.66 0.825701
Target:  5'- cCGUCGCUGUCCcucagcACGGUGuCGAuguagccCCGGa -3'
miRNA:   3'- aGCAGUGGCAGG------UGCUACuGUU-------GGUC- -5'
18564 3' -52.6 NC_004682.1 + 23380 0.67 0.817293
Target:  5'- cCGUCGCgagGUCCGCGAgggccgugaacGACAGCgAGa -3'
miRNA:   3'- aGCAGUGg--CAGGUGCUa----------CUGUUGgUC- -5'
18564 3' -52.6 NC_004682.1 + 39030 0.67 0.817293
Target:  5'- cUCGgccUCGCCgGUCCACGAcgccgaGACGgcACCGGu -3'
miRNA:   3'- -AGC---AGUGG-CAGGUGCUa-----CUGU--UGGUC- -5'
18564 3' -52.6 NC_004682.1 + 3036 0.67 0.797056
Target:  5'- cCGUCACCGUUCgaucaggACGA-GGCGGCUg- -3'
miRNA:   3'- aGCAGUGGCAGG-------UGCUaCUGUUGGuc -5'
18564 3' -52.6 NC_004682.1 + 21901 0.67 0.788137
Target:  5'- gCGUucaCGCUGUCaGCGuuccUGGCGACCAGg -3'
miRNA:   3'- aGCA---GUGGCAGgUGCu---ACUGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 18102 0.67 0.778069
Target:  5'- cUCGUCACCaUCUACGccGA-GGCCGGu -3'
miRNA:   3'- -AGCAGUGGcAGGUGCuaCUgUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 49961 0.67 0.778069
Target:  5'- cUGUgGCCGUCC-CGAUGAgCAugCu- -3'
miRNA:   3'- aGCAgUGGCAGGuGCUACU-GUugGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.