Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 35890 | 1.1 | 0.00157 |
Target: 5'- cUCGUCACCGUCCACGAUGACAACCAGg -3' miRNA: 3'- -AGCAGUGGCAGGUGCUACUGUUGGUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 37406 | 0.79 | 0.210231 |
Target: 5'- gUGUUGCCGUCCucguCGGUGACGACCu- -3' miRNA: 3'- aGCAGUGGCAGGu---GCUACUGUUGGuc -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 10025 | 0.75 | 0.343167 |
Target: 5'- aUCGUgGUCGUCCACGGUGGCGcUCGGg -3' miRNA: 3'- -AGCAgUGGCAGGUGCUACUGUuGGUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 38371 | 0.73 | 0.468195 |
Target: 5'- cUCGUCcCCGUCCGCGAgGAUGAagacuucccgguaccCCAGg -3' miRNA: 3'- -AGCAGuGGCAGGUGCUaCUGUU---------------GGUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 44405 | 0.73 | 0.444052 |
Target: 5'- cUGgCACCGUCCAUGAUcGAgGACCAc -3' miRNA: 3'- aGCaGUGGCAGGUGCUA-CUgUUGGUc -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 44065 | 0.72 | 0.504562 |
Target: 5'- cUUGUCGCCGUCCGUGAUGgaggcguACAugucACCAGc -3' miRNA: 3'- -AGCAGUGGCAGGUGCUAC-------UGU----UGGUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 8310 | 0.71 | 0.592709 |
Target: 5'- aCGcCACCGUCCGCucGAUGuucGCCAGc -3' miRNA: 3'- aGCaGUGGCAGGUG--CUACuguUGGUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 25882 | 0.71 | 0.574978 |
Target: 5'- cUCGUCGgCGuuggucuugucggucUCCugGGUGACccAGCCAGa -3' miRNA: 3'- -AGCAGUgGC---------------AGGugCUACUG--UUGGUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 45215 | 0.71 | 0.548626 |
Target: 5'- gUCGUCACCGaCCGCGAgugcGCGguuCCAGc -3' miRNA: 3'- -AGCAGUGGCaGGUGCUac--UGUu--GGUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 10995 | 0.7 | 0.648502 |
Target: 5'- aUCGUC-CCGUUCGCGGcUGGCAagaGCgCAGc -3' miRNA: 3'- -AGCAGuGGCAGGUGCU-ACUGU---UG-GUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 20150 | 0.7 | 0.626159 |
Target: 5'- cUCGUCGCUGaCCgacaGCGAUGGCGAUCc- -3' miRNA: 3'- -AGCAGUGGCaGG----UGCUACUGUUGGuc -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 34763 | 0.7 | 0.603837 |
Target: 5'- cCGUUGCCGUgCGCGAacGCcGCCAGg -3' miRNA: 3'- aGCAGUGGCAgGUGCUacUGuUGGUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 9296 | 0.7 | 0.626159 |
Target: 5'- -gGUCAuCUGgaaCCGCGAgGACGGCCAGu -3' miRNA: 3'- agCAGU-GGCa--GGUGCUaCUGUUGGUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 34115 | 0.7 | 0.61499 |
Target: 5'- gUCGUCGCCGaaCGcCGAgaACAGCCGGg -3' miRNA: 3'- -AGCAGUGGCagGU-GCUacUGUUGGUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 49997 | 0.69 | 0.659656 |
Target: 5'- cUGUCACC-UCCugGGUGGuCAGCgGGc -3' miRNA: 3'- aGCAGUGGcAGGugCUACU-GUUGgUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 29453 | 0.69 | 0.670783 |
Target: 5'- -gGUCauGCCGUCCgauGCGAUGuuGACCAc -3' miRNA: 3'- agCAG--UGGCAGG---UGCUACugUUGGUc -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 15970 | 0.69 | 0.692914 |
Target: 5'- cUCGUCGCUGUCCaACGucgGGgAGCCc- -3' miRNA: 3'- -AGCAGUGGCAGG-UGCua-CUgUUGGuc -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 22738 | 0.69 | 0.681873 |
Target: 5'- gCGcUCGCCG-CCGCGA--GCAGCCAc -3' miRNA: 3'- aGC-AGUGGCaGGUGCUacUGUUGGUc -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 26399 | 0.69 | 0.670783 |
Target: 5'- aCGUCGCCGggucgaacgUCgGCGggGcCAGCCGGa -3' miRNA: 3'- aGCAGUGGC---------AGgUGCuaCuGUUGGUC- -5' |
|||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 16271 | 0.69 | 0.659656 |
Target: 5'- gUGUCACCGUCgAUG-UGAacacCGACCGGc -3' miRNA: 3'- aGCAGUGGCAGgUGCuACU----GUUGGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home