Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18564 | 3' | -52.6 | NC_004682.1 | + | 38371 | 0.73 | 0.468195 |
Target: 5'- cUCGUCcCCGUCCGCGAgGAUGAagacuucccgguaccCCAGg -3' miRNA: 3'- -AGCAGuGGCAGGUGCUaCUGUU---------------GGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 37248 | 0.66 | 0.853317 |
Target: 5'- cCGgauGCCG-CCACGGUGGCcguggguggucAACCAGc -3' miRNA: 3'- aGCag-UGGCaGGUGCUACUG-----------UUGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 13433 | 0.66 | 0.853317 |
Target: 5'- gUCGUCACCGaCgAgGAcGGCAAcacCCAGa -3' miRNA: 3'- -AGCAGUGGCaGgUgCUaCUGUU---GGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 41551 | 0.66 | 0.844647 |
Target: 5'- -gGUCA-CGUUguCGAUGACcACCAGc -3' miRNA: 3'- agCAGUgGCAGguGCUACUGuUGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 42760 | 0.66 | 0.835746 |
Target: 5'- -gGUCAggaCGUgCCACGcgGGCAgACCGGg -3' miRNA: 3'- agCAGUg--GCA-GGUGCuaCUGU-UGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 43545 | 0.66 | 0.825701 |
Target: 5'- cCGUCGCUGUCCcucagcACGGUGuCGAuguagccCCGGa -3' miRNA: 3'- aGCAGUGGCAGG------UGCUACuGUU-------GGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 21901 | 0.67 | 0.788137 |
Target: 5'- gCGUucaCGCUGUCaGCGuuccUGGCGACCAGg -3' miRNA: 3'- aGCA---GUGGCAGgUGCu---ACUGUUGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 49961 | 0.67 | 0.778069 |
Target: 5'- cUGUgGCCGUCC-CGAUGAgCAugCu- -3' miRNA: 3'- aGCAgUGGCAGGuGCUACU-GUugGuc -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 26244 | 0.68 | 0.767845 |
Target: 5'- cUCGgUGCCGUCCGCGA--GCuuCCGGu -3' miRNA: 3'- -AGCaGUGGCAGGUGCUacUGuuGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 12023 | 0.68 | 0.766815 |
Target: 5'- cCGUCugCGUUCAagggcuaccuggcCGA-GACGACCAa -3' miRNA: 3'- aGCAGugGCAGGU-------------GCUaCUGUUGGUc -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 25998 | 0.68 | 0.725628 |
Target: 5'- cUCGUCcucaGCCGU-CGCGAUGA-GGCCGGc -3' miRNA: 3'- -AGCAG----UGGCAgGUGCUACUgUUGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 25882 | 0.71 | 0.574978 |
Target: 5'- cUCGUCGgCGuuggucuugucggucUCCugGGUGACccAGCCAGa -3' miRNA: 3'- -AGCAGUgGC---------------AGGugCUACUG--UUGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 8310 | 0.71 | 0.592709 |
Target: 5'- aCGcCACCGUCCGCucGAUGuucGCCAGc -3' miRNA: 3'- aGCaGUGGCAGGUG--CUACuguUGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 34763 | 0.7 | 0.603837 |
Target: 5'- cCGUUGCCGUgCGCGAacGCcGCCAGg -3' miRNA: 3'- aGCAGUGGCAgGUGCUacUGuUGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 9296 | 0.7 | 0.626159 |
Target: 5'- -gGUCAuCUGgaaCCGCGAgGACGGCCAGu -3' miRNA: 3'- agCAGU-GGCa--GGUGCUaCUGUUGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 20150 | 0.7 | 0.626159 |
Target: 5'- cUCGUCGCUGaCCgacaGCGAUGGCGAUCc- -3' miRNA: 3'- -AGCAGUGGCaGG----UGCUACUGUUGGuc -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 16271 | 0.69 | 0.659656 |
Target: 5'- gUGUCACCGUCgAUG-UGAacacCGACCGGc -3' miRNA: 3'- aGCAGUGGCAGgUGCuACU----GUUGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 26399 | 0.69 | 0.670783 |
Target: 5'- aCGUCGCCGggucgaacgUCgGCGggGcCAGCCGGa -3' miRNA: 3'- aGCAGUGGC---------AGgUGCuaCuGUUGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 35890 | 1.1 | 0.00157 |
Target: 5'- cUCGUCACCGUCCACGAUGACAACCAGg -3' miRNA: 3'- -AGCAGUGGCAGGUGCUACUGUUGGUC- -5' |
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18564 | 3' | -52.6 | NC_004682.1 | + | 23127 | 0.66 | 0.861749 |
Target: 5'- --aUCACCGUCa--GGUGaguuGCGGCCAGg -3' miRNA: 3'- agcAGUGGCAGgugCUAC----UGUUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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