miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18566 3' -53.4 NC_004682.1 + 14731 0.66 0.814454
Target:  5'- aGUUCgGCuUCGACGGUgguGACACCgagguccgggguucGUGGCa -3'
miRNA:   3'- -CAAG-UGuAGCUGCCA---CUGUGG--------------CGCUG- -5'
18566 3' -53.4 NC_004682.1 + 27104 0.66 0.807761
Target:  5'- -gUCugGcCGcucaaACGGUGAgACCGUGGCc -3'
miRNA:   3'- caAGugUaGC-----UGCCACUgUGGCGCUG- -5'
18566 3' -53.4 NC_004682.1 + 43777 0.66 0.807761
Target:  5'- aGUUCGgGgucaCGuCGGUG-UACUGCGACa -3'
miRNA:   3'- -CAAGUgUa---GCuGCCACuGUGGCGCUG- -5'
18566 3' -53.4 NC_004682.1 + 48914 0.66 0.798039
Target:  5'- -gUCGCAguccUUGACGa--ACGCCGCGACc -3'
miRNA:   3'- caAGUGU----AGCUGCcacUGUGGCGCUG- -5'
18566 3' -53.4 NC_004682.1 + 43404 0.66 0.798039
Target:  5'- ---gGCggCGAUGGUGAUcCaCGCGGCg -3'
miRNA:   3'- caagUGuaGCUGCCACUGuG-GCGCUG- -5'
18566 3' -53.4 NC_004682.1 + 42493 0.66 0.788137
Target:  5'- cUUCACGUCGGCGcG-GAa--UGCGACa -3'
miRNA:   3'- cAAGUGUAGCUGC-CaCUgugGCGCUG- -5'
18566 3' -53.4 NC_004682.1 + 24481 0.66 0.788137
Target:  5'- -aUCAuCAUCGACuacaccGACACCGCuGGCa -3'
miRNA:   3'- caAGU-GUAGCUGcca---CUGUGGCG-CUG- -5'
18566 3' -53.4 NC_004682.1 + 23618 0.66 0.787138
Target:  5'- -gUCGCuUCGGCGGUggccaagaucaucGACACCcUGACc -3'
miRNA:   3'- caAGUGuAGCUGCCA-------------CUGUGGcGCUG- -5'
18566 3' -53.4 NC_004682.1 + 4643 0.66 0.778069
Target:  5'- -aUCGaggcCAUCGagaaccccggacGgGGUGACgACCGCGACg -3'
miRNA:   3'- caAGU----GUAGC------------UgCCACUG-UGGCGCUG- -5'
18566 3' -53.4 NC_004682.1 + 1037 0.67 0.767845
Target:  5'- --aCACGUCGGC-GUGAgGgaaCGCGACa -3'
miRNA:   3'- caaGUGUAGCUGcCACUgUg--GCGCUG- -5'
18566 3' -53.4 NC_004682.1 + 29678 0.67 0.757477
Target:  5'- --aCACA-CGAUGGUGAgCugCGCGuCc -3'
miRNA:   3'- caaGUGUaGCUGCCACU-GugGCGCuG- -5'
18566 3' -53.4 NC_004682.1 + 7772 0.67 0.746976
Target:  5'- --gCACAUCccCGGcaacGACACCGUGGCc -3'
miRNA:   3'- caaGUGUAGcuGCCa---CUGUGGCGCUG- -5'
18566 3' -53.4 NC_004682.1 + 14992 0.67 0.725628
Target:  5'- --cCACAaggCGuCGGUG-CGCCGgGACg -3'
miRNA:   3'- caaGUGUa--GCuGCCACuGUGGCgCUG- -5'
18566 3' -53.4 NC_004682.1 + 28708 0.68 0.703895
Target:  5'- -cUCGCggCGGCGGcgggacgaagaUGACGCCGUG-Cg -3'
miRNA:   3'- caAGUGuaGCUGCC-----------ACUGUGGCGCuG- -5'
18566 3' -53.4 NC_004682.1 + 8383 0.68 0.692914
Target:  5'- --gUACGUCGACcaGUGGgGCCGgGACu -3'
miRNA:   3'- caaGUGUAGCUGc-CACUgUGGCgCUG- -5'
18566 3' -53.4 NC_004682.1 + 39671 0.68 0.692914
Target:  5'- -aUCA---UGACGGUGAacaACUGCGGCa -3'
miRNA:   3'- caAGUguaGCUGCCACUg--UGGCGCUG- -5'
18566 3' -53.4 NC_004682.1 + 40345 0.68 0.692914
Target:  5'- --cCGCGUCGagcGCGGU--CACCGCGAa -3'
miRNA:   3'- caaGUGUAGC---UGCCAcuGUGGCGCUg -5'
18566 3' -53.4 NC_004682.1 + 16261 0.69 0.637333
Target:  5'- --gCugGUCG-CGGUGuCACCGuCGAUg -3'
miRNA:   3'- caaGugUAGCuGCCACuGUGGC-GCUG- -5'
18566 3' -53.4 NC_004682.1 + 39396 0.69 0.637333
Target:  5'- --gUACuccUCGGCGGUGAUGCCGUagguGGCg -3'
miRNA:   3'- caaGUGu--AGCUGCCACUGUGGCG----CUG- -5'
18566 3' -53.4 NC_004682.1 + 20677 0.69 0.61499
Target:  5'- --cCACAUggccaaGugGGUGAUgaacuucaaggGCCGCGACa -3'
miRNA:   3'- caaGUGUAg-----CugCCACUG-----------UGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.