miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18566 5' -56 NC_004682.1 + 13987 0.66 0.679941
Target:  5'- -gAUCGUCGCCucgcaguggccugggGUCAUCGaGGCuGACg -3'
miRNA:   3'- cgUAGCGGCGG---------------UAGUAGCgCCGcUUG- -5'
18566 5' -56 NC_004682.1 + 45305 0.69 0.461229
Target:  5'- cCGUCGCgaGaCCGUCucgauGUCGCGGCGGucGCa -3'
miRNA:   3'- cGUAGCGg-C-GGUAG-----UAGCGCCGCU--UG- -5'
18566 5' -56 NC_004682.1 + 5257 0.68 0.555039
Target:  5'- -gAUCGCCGCCAUgcUCGCcGCGcuggGGCu -3'
miRNA:   3'- cgUAGCGGCGGUAguAGCGcCGC----UUG- -5'
18566 5' -56 NC_004682.1 + 23124 0.67 0.565858
Target:  5'- aGCAUCaCCGUCAggugaGUUGCGGCcagGAGCc -3'
miRNA:   3'- -CGUAGcGGCGGUag---UAGCGCCG---CUUG- -5'
18566 5' -56 NC_004682.1 + 23322 0.66 0.631609
Target:  5'- ---aCGCCGCCGUCGaugacaaGCGGCa--- -3'
miRNA:   3'- cguaGCGGCGGUAGUag-----CGCCGcuug -5'
18566 5' -56 NC_004682.1 + 31458 0.66 0.642624
Target:  5'- gGCGUCGUgacauacaGCUugcaGUCGCGGuCGAACg -3'
miRNA:   3'- -CGUAGCGg-------CGGuag-UAGCGCC-GCUUG- -5'
18566 5' -56 NC_004682.1 + 34611 1.11 0.000512
Target:  5'- cGCAUCGCCGCCAUCAUCGCGGCGAACu -3'
miRNA:   3'- -CGUAGCGGCGGUAGUAGCGCCGCUUG- -5'
18566 5' -56 NC_004682.1 + 13173 0.7 0.40447
Target:  5'- cGCAUCGUCGUCAUCAgcgacacgcagauccCGUuccacgaccGGCGGGCg -3'
miRNA:   3'- -CGUAGCGGCGGUAGUa--------------GCG---------CCGCUUG- -5'
18566 5' -56 NC_004682.1 + 35183 0.69 0.491656
Target:  5'- gGCAgUCGCCGUauUCGUCaaucagGCGgGCGAGCg -3'
miRNA:   3'- -CGU-AGCGGCGguAGUAG------CGC-CGCUUG- -5'
18566 5' -56 NC_004682.1 + 21594 0.66 0.620595
Target:  5'- uCAUCGCCGCCGUCca--CGGCu--- -3'
miRNA:   3'- cGUAGCGGCGGUAGuagcGCCGcuug -5'
18566 5' -56 NC_004682.1 + 19165 0.66 0.67557
Target:  5'- cCGUUGCCGCC-UCGUCcaguuCGGCacuccGAACg -3'
miRNA:   3'- cGUAGCGGCGGuAGUAGc----GCCG-----CUUG- -5'
18566 5' -56 NC_004682.1 + 32894 0.72 0.302857
Target:  5'- aGgAUCGCCGgCAUCAuUCGUG-CGAACg -3'
miRNA:   3'- -CgUAGCGGCgGUAGU-AGCGCcGCUUG- -5'
18566 5' -56 NC_004682.1 + 14140 0.66 0.67557
Target:  5'- -gAUCGCCaGCCAgga--GCGGaCGGACu -3'
miRNA:   3'- cgUAGCGG-CGGUaguagCGCC-GCUUG- -5'
18566 5' -56 NC_004682.1 + 32380 0.68 0.512447
Target:  5'- gGCAUCGCCGaacaCuUCcuUCGCGGCcuGCa -3'
miRNA:   3'- -CGUAGCGGCg---GuAGu-AGCGCCGcuUG- -5'
18566 5' -56 NC_004682.1 + 4566 0.73 0.288082
Target:  5'- cGCAaCGCCGCguUCGcucgggCGCuGGCGAGCu -3'
miRNA:   3'- -CGUaGCGGCGguAGUa-----GCG-CCGCUUG- -5'
18566 5' -56 NC_004682.1 + 44665 0.66 0.653629
Target:  5'- aGCGUCGUCguagccgaaauaGCCGUCGacUCGCaGCGGc- -3'
miRNA:   3'- -CGUAGCGG------------CGGUAGU--AGCGcCGCUug -5'
18566 5' -56 NC_004682.1 + 10260 0.69 0.451309
Target:  5'- cCAUCGCCGCCggCAUCcCGGuCGucAACc -3'
miRNA:   3'- cGUAGCGGCGGuaGUAGcGCC-GC--UUG- -5'
18566 5' -56 NC_004682.1 + 10955 0.67 0.576731
Target:  5'- cGCAgaacgCGCU-CCGUCGUCGCccgaacggGGCGAAg -3'
miRNA:   3'- -CGUa----GCGGcGGUAGUAGCG--------CCGCUUg -5'
18566 5' -56 NC_004682.1 + 39328 0.67 0.565858
Target:  5'- cGCuucCGCuUGCCGUUggCGCGGCGGc- -3'
miRNA:   3'- -CGua-GCG-GCGGUAGuaGCGCCGCUug -5'
18566 5' -56 NC_004682.1 + 27517 0.67 0.565858
Target:  5'- ---gUGCCGCuUGUCAUCGaCGGCGGc- -3'
miRNA:   3'- cguaGCGGCG-GUAGUAGC-GCCGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.