Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18569 | 5' | -54.2 | NC_004682.1 | + | 34022 | 1.11 | 0.000814 |
Target: 5'- cGCCACGAAGACGCCUGUGACCAACCAa -3' miRNA: 3'- -CGGUGCUUCUGCGGACACUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 31971 | 0.73 | 0.374922 |
Target: 5'- cGCCAUGAAGGCGacggccaUCUG-GACCGGCUg -3' miRNA: 3'- -CGGUGCUUCUGC-------GGACaCUGGUUGGu -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 37256 | 0.72 | 0.393916 |
Target: 5'- cGCCACG--GugGCCguggGUGGUCAACCAg -3' miRNA: 3'- -CGGUGCuuCugCGGa---CACUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 8367 | 0.71 | 0.461516 |
Target: 5'- gGCCGCaGGGAgGCCgaccccGGCCAGCCAg -3' miRNA: 3'- -CGGUGcUUCUgCGGaca---CUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 34603 | 0.71 | 0.47167 |
Target: 5'- cGCCAgGAAcGACGCCacgccgagGUGGCCcacGCCGa -3' miRNA: 3'- -CGGUgCUU-CUGCGGa-------CACUGGu--UGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 7699 | 0.71 | 0.481935 |
Target: 5'- cGCCugGAccggagcguGGCGgCUGccGACCGACCAg -3' miRNA: 3'- -CGGugCUu--------CUGCgGACa-CUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 4345 | 0.7 | 0.502781 |
Target: 5'- aGCCGCucaccAAGGCGCUgGUGACCG-CCGu -3' miRNA: 3'- -CGGUGc----UUCUGCGGaCACUGGUuGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 47595 | 0.7 | 0.524011 |
Target: 5'- cCCG-GAGGACGCgCUGgcGACCGGCCu -3' miRNA: 3'- cGGUgCUUCUGCG-GACa-CUGGUUGGu -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 40009 | 0.69 | 0.545574 |
Target: 5'- -gCGCGAGgccGAgGCCcucgGUGGCCGACCGu -3' miRNA: 3'- cgGUGCUU---CUgCGGa---CACUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 41450 | 0.69 | 0.567414 |
Target: 5'- aCCACGcAGGCGCUcGUcGACCGcGCCAu -3' miRNA: 3'- cGGUGCuUCUGCGGaCA-CUGGU-UGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 29246 | 0.69 | 0.567414 |
Target: 5'- cGCCuCGuuGACGCCUGgcaucGACUcACCGc -3' miRNA: 3'- -CGGuGCuuCUGCGGACa----CUGGuUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 47711 | 0.69 | 0.600557 |
Target: 5'- cGCCGCcu--GCGCCaGUGAUCGACCc -3' miRNA: 3'- -CGGUGcuucUGCGGaCACUGGUUGGu -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 18086 | 0.68 | 0.611672 |
Target: 5'- aUCACGAAGGUGUCggaauggGUGGCCAGCUu -3' miRNA: 3'- cGGUGCUUCUGCGGa------CACUGGUUGGu -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 8411 | 0.68 | 0.632832 |
Target: 5'- aCCACGAGGAguucgGCCUGUGAUCccucguuGGCUAu -3' miRNA: 3'- cGGUGCUUCUg----CGGACACUGG-------UUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 49949 | 0.68 | 0.633947 |
Target: 5'- --gGCGugcGAUGCCUGUGGCCGucCCGa -3' miRNA: 3'- cggUGCuu-CUGCGGACACUGGUu-GGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 13722 | 0.68 | 0.645086 |
Target: 5'- gGCUACGgcGGCGac-GUGACCAagACCGu -3' miRNA: 3'- -CGGUGCuuCUGCggaCACUGGU--UGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 45719 | 0.68 | 0.656214 |
Target: 5'- cGCCgACGAAGAucuccUGCCaggUGUGGCUgaAGCCGa -3' miRNA: 3'- -CGG-UGCUUCU-----GCGG---ACACUGG--UUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 12273 | 0.68 | 0.656214 |
Target: 5'- -aCAUGAcGcAgGCCgGUGACCGGCCAc -3' miRNA: 3'- cgGUGCUuC-UgCGGaCACUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 50202 | 0.67 | 0.667319 |
Target: 5'- cGCCugGguGAgGCaaccgGACCAACCGa -3' miRNA: 3'- -CGGugCuuCUgCGgaca-CUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 30719 | 0.67 | 0.67839 |
Target: 5'- gGCCAgGAAGcacCGCCgc--ACCAGCCAg -3' miRNA: 3'- -CGGUgCUUCu--GCGGacacUGGUUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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