Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18569 | 5' | -54.2 | NC_004682.1 | + | 4345 | 0.7 | 0.502781 |
Target: 5'- aGCCGCucaccAAGGCGCUgGUGACCG-CCGu -3' miRNA: 3'- -CGGUGc----UUCUGCGGaCACUGGUuGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 5392 | 0.67 | 0.711288 |
Target: 5'- uGCUuCGAccGCgGCCUgGUGACCGACCc -3' miRNA: 3'- -CGGuGCUucUG-CGGA-CACUGGUUGGu -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 7699 | 0.71 | 0.481935 |
Target: 5'- cGCCugGAccggagcguGGCGgCUGccGACCGACCAg -3' miRNA: 3'- -CGGugCUu--------CUGCgGACa-CUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 8367 | 0.71 | 0.461516 |
Target: 5'- gGCCGCaGGGAgGCCgaccccGGCCAGCCAg -3' miRNA: 3'- -CGGUGcUUCUgCGGaca---CUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 8411 | 0.68 | 0.632832 |
Target: 5'- aCCACGAGGAguucgGCCUGUGAUCccucguuGGCUAu -3' miRNA: 3'- cGGUGCUUCUg----CGGACACUGG-------UUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 10493 | 0.67 | 0.700386 |
Target: 5'- cCCAgGAGGAgGCCgGUGACgCAGgCGu -3' miRNA: 3'- cGGUgCUUCUgCGGaCACUG-GUUgGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 10583 | 0.66 | 0.73284 |
Target: 5'- cGCUGCGAGcgcucGACGCaCUGggcauUGACCAgGCCGu -3' miRNA: 3'- -CGGUGCUU-----CUGCG-GAC-----ACUGGU-UGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 10616 | 0.66 | 0.73284 |
Target: 5'- uUCGCGGguGGGCGCgaGUGGCCAcuggucgagagACCu -3' miRNA: 3'- cGGUGCU--UCUGCGgaCACUGGU-----------UGGu -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 12273 | 0.68 | 0.656214 |
Target: 5'- -aCAUGAcGcAgGCCgGUGACCGGCCAc -3' miRNA: 3'- cgGUGCUuC-UgCGGaCACUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 13722 | 0.68 | 0.645086 |
Target: 5'- gGCUACGgcGGCGac-GUGACCAagACCGu -3' miRNA: 3'- -CGGUGCuuCUGCggaCACUGGU--UGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 16162 | 0.66 | 0.73284 |
Target: 5'- gGCgACGuucuCGCCUGUGGCaGACCc -3' miRNA: 3'- -CGgUGCuucuGCGGACACUGgUUGGu -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 16544 | 0.67 | 0.711288 |
Target: 5'- gGCUGCGccagcaggacAAGAC-CCUGacGGCCAACCAg -3' miRNA: 3'- -CGGUGC----------UUCUGcGGACa-CUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 18086 | 0.68 | 0.611672 |
Target: 5'- aUCACGAAGGUGUCggaauggGUGGCCAGCUu -3' miRNA: 3'- cGGUGCUUCUGCGGa------CACUGGUUGGu -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 19517 | 0.66 | 0.718872 |
Target: 5'- aCgACGAAGGCGCacauCUGgacgaagguggagcUGACCAACCc -3' miRNA: 3'- cGgUGCUUCUGCG----GAC--------------ACUGGUUGGu -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 23428 | 0.66 | 0.743467 |
Target: 5'- cGCCgACGgcGAuugugcCGCCcGUGGCCAcCCGu -3' miRNA: 3'- -CGG-UGCuuCU------GCGGaCACUGGUuGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 23509 | 0.67 | 0.682807 |
Target: 5'- aGCUGCGAAGACaGUCugucgcaacuguacuUGUcucGGCCAGCCGa -3' miRNA: 3'- -CGGUGCUUCUG-CGG---------------ACA---CUGGUUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 24601 | 0.66 | 0.743467 |
Target: 5'- aGCuCGCGGAcGGCaCCgagGUGACCuACCGg -3' miRNA: 3'- -CG-GUGCUU-CUGcGGa--CACUGGuUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 27429 | 0.66 | 0.76333 |
Target: 5'- cGCCAccuaccuCGAAuGCGCCaGUGccgaGCCAGCCu -3' miRNA: 3'- -CGGU-------GCUUcUGCGGaCAC----UGGUUGGu -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 29246 | 0.69 | 0.567414 |
Target: 5'- cGCCuCGuuGACGCCUGgcaucGACUcACCGc -3' miRNA: 3'- -CGGuGCuuCUGCGGACa----CUGGuUGGU- -5' |
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18569 | 5' | -54.2 | NC_004682.1 | + | 30717 | 0.66 | 0.753978 |
Target: 5'- cGCUugGAucaACGgCUGUGGCaGACCGg -3' miRNA: 3'- -CGGugCUuc-UGCgGACACUGgUUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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