miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18569 5' -54.2 NC_004682.1 + 31971 0.73 0.374922
Target:  5'- cGCCAUGAAGGCGacggccaUCUG-GACCGGCUg -3'
miRNA:   3'- -CGGUGCUUCUGC-------GGACaCUGGUUGGu -5'
18569 5' -54.2 NC_004682.1 + 5392 0.67 0.711288
Target:  5'- uGCUuCGAccGCgGCCUgGUGACCGACCc -3'
miRNA:   3'- -CGGuGCUucUG-CGGA-CACUGGUUGGu -5'
18569 5' -54.2 NC_004682.1 + 16544 0.67 0.711288
Target:  5'- gGCUGCGccagcaggacAAGAC-CCUGacGGCCAACCAg -3'
miRNA:   3'- -CGGUGC----------UUCUGcGGACa-CUGGUUGGU- -5'
18569 5' -54.2 NC_004682.1 + 40362 0.66 0.722109
Target:  5'- aCCGCGAAGccuCGCUg--GGCCAGCUc -3'
miRNA:   3'- cGGUGCUUCu--GCGGacaCUGGUUGGu -5'
18569 5' -54.2 NC_004682.1 + 10616 0.66 0.73284
Target:  5'- uUCGCGGguGGGCGCgaGUGGCCAcuggucgagagACCu -3'
miRNA:   3'- cGGUGCU--UCUGCGgaCACUGGU-----------UGGu -5'
18569 5' -54.2 NC_004682.1 + 37844 0.66 0.743467
Target:  5'- gGCCACGucGAUGUCguUGAUCGGCUg -3'
miRNA:   3'- -CGGUGCuuCUGCGGacACUGGUUGGu -5'
18569 5' -54.2 NC_004682.1 + 39852 0.66 0.743467
Target:  5'- aGCCGCGAacgGGACGaUCUGaucgGACaGGCCGu -3'
miRNA:   3'- -CGGUGCU---UCUGC-GGACa---CUGgUUGGU- -5'
18569 5' -54.2 NC_004682.1 + 40084 0.66 0.753978
Target:  5'- cGCC-CGAgAGGCGCUgUGUGGCCcGCa- -3'
miRNA:   3'- -CGGuGCU-UCUGCGG-ACACUGGuUGgu -5'
18569 5' -54.2 NC_004682.1 + 30748 0.66 0.758147
Target:  5'- cGCCGCuGGgcagcgucugagccgGGAUGCCgGUGAUCGACa- -3'
miRNA:   3'- -CGGUG-CU---------------UCUGCGGaCACUGGUUGgu -5'
18569 5' -54.2 NC_004682.1 + 10493 0.67 0.700386
Target:  5'- cCCAgGAGGAgGCCgGUGACgCAGgCGu -3'
miRNA:   3'- cGGUgCUUCUgCGGaCACUG-GUUgGU- -5'
18569 5' -54.2 NC_004682.1 + 30719 0.67 0.67839
Target:  5'- gGCCAgGAAGcacCGCCgc--ACCAGCCAg -3'
miRNA:   3'- -CGGUgCUUCu--GCGGacacUGGUUGGU- -5'
18569 5' -54.2 NC_004682.1 + 45719 0.68 0.656214
Target:  5'- cGCCgACGAAGAucuccUGCCaggUGUGGCUgaAGCCGa -3'
miRNA:   3'- -CGG-UGCUUCU-----GCGG---ACACUGG--UUGGU- -5'
18569 5' -54.2 NC_004682.1 + 37256 0.72 0.393916
Target:  5'- cGCCACG--GugGCCguggGUGGUCAACCAg -3'
miRNA:   3'- -CGGUGCuuCugCGGa---CACUGGUUGGU- -5'
18569 5' -54.2 NC_004682.1 + 34603 0.71 0.47167
Target:  5'- cGCCAgGAAcGACGCCacgccgagGUGGCCcacGCCGa -3'
miRNA:   3'- -CGGUgCUU-CUGCGGa-------CACUGGu--UGGU- -5'
18569 5' -54.2 NC_004682.1 + 4345 0.7 0.502781
Target:  5'- aGCCGCucaccAAGGCGCUgGUGACCG-CCGu -3'
miRNA:   3'- -CGGUGc----UUCUGCGGaCACUGGUuGGU- -5'
18569 5' -54.2 NC_004682.1 + 47595 0.7 0.524011
Target:  5'- cCCG-GAGGACGCgCUGgcGACCGGCCu -3'
miRNA:   3'- cGGUgCUUCUGCG-GACa-CUGGUUGGu -5'
18569 5' -54.2 NC_004682.1 + 40009 0.69 0.545574
Target:  5'- -gCGCGAGgccGAgGCCcucgGUGGCCGACCGu -3'
miRNA:   3'- cgGUGCUU---CUgCGGa---CACUGGUUGGU- -5'
18569 5' -54.2 NC_004682.1 + 41450 0.69 0.567414
Target:  5'- aCCACGcAGGCGCUcGUcGACCGcGCCAu -3'
miRNA:   3'- cGGUGCuUCUGCGGaCA-CUGGU-UGGU- -5'
18569 5' -54.2 NC_004682.1 + 18086 0.68 0.611672
Target:  5'- aUCACGAAGGUGUCggaauggGUGGCCAGCUu -3'
miRNA:   3'- cGGUGCUUCUGCGGa------CACUGGUUGGu -5'
18569 5' -54.2 NC_004682.1 + 49949 0.68 0.633947
Target:  5'- --gGCGugcGAUGCCUGUGGCCGucCCGa -3'
miRNA:   3'- cggUGCuu-CUGCGGACACUGGUu-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.