miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18574 5' -55.4 NC_004682.1 + 32644 1.08 0.000998
Target:  5'- cUUACCGGACUCGACCAGGAACGAGCCc -3'
miRNA:   3'- -AAUGGCCUGAGCUGGUCCUUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 12457 0.76 0.189486
Target:  5'- gUACCGGGaagucuucaucCUCGcggaCGGGGACGAGCCg -3'
miRNA:   3'- aAUGGCCU-----------GAGCug--GUCCUUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 128 0.75 0.216629
Target:  5'- ---aUGGGCUCGACCGccGGcACGGGCCg -3'
miRNA:   3'- aaugGCCUGAGCUGGU--CCuUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 41235 0.75 0.228388
Target:  5'- -gGCCuuGGAUUCGugguccucgaacGCCAGGAuGCGAGCCa -3'
miRNA:   3'- aaUGG--CCUGAGC------------UGGUCCU-UGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 50302 0.73 0.302914
Target:  5'- -gACCGGucACUgguUGACCAGGAcaACGAGaCCa -3'
miRNA:   3'- aaUGGCC--UGA---GCUGGUCCU--UGCUC-GG- -5'
18574 5' -55.4 NC_004682.1 + 49536 0.72 0.326246
Target:  5'- -aACCGGagaggggacgGCUCGACCccuccGGGGCGGGUCu -3'
miRNA:   3'- aaUGGCC----------UGAGCUGGu----CCUUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 35073 0.71 0.376818
Target:  5'- -gACCGGuaGCUCcuugaugagGACCAGG-GCGAGCUu -3'
miRNA:   3'- aaUGGCC--UGAG---------CUGGUCCuUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 44370 0.71 0.413347
Target:  5'- -cACCGGACUuugacgCGAUCuGGGAGCGaAGCUc -3'
miRNA:   3'- aaUGGCCUGA------GCUGG-UCCUUGC-UCGG- -5'
18574 5' -55.4 NC_004682.1 + 7914 0.69 0.481187
Target:  5'- -gACCGucCUCGACUucaucggGGGGccgGCGGGCCa -3'
miRNA:   3'- aaUGGCcuGAGCUGG-------UCCU---UGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 9599 0.69 0.48221
Target:  5'- --uCCGGGCUCGACUAcgcGGAGCuuGAGUUc -3'
miRNA:   3'- aauGGCCUGAGCUGGU---CCUUG--CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 19717 0.69 0.48221
Target:  5'- cUGCCuGGCUCcACCgAGGAGCccgcuGAGCCg -3'
miRNA:   3'- aAUGGcCUGAGcUGG-UCCUUG-----CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 24537 0.69 0.502897
Target:  5'- aUGCuCGGGgUCGGCCAcugcGGGGCcugugGAGCCu -3'
miRNA:   3'- aAUG-GCCUgAGCUGGU----CCUUG-----CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 34188 0.69 0.513385
Target:  5'- cUGCC-GACUCcACCAGGGACucaGAGUCc -3'
miRNA:   3'- aAUGGcCUGAGcUGGUCCUUG---CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 4445 0.69 0.523961
Target:  5'- cUACCGGGg-CGACaAGGAGCGcGCUg -3'
miRNA:   3'- aAUGGCCUgaGCUGgUCCUUGCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 36191 0.68 0.53462
Target:  5'- -gGCCGGugUCGGUCAGGuucagcgucuUGAGCUg -3'
miRNA:   3'- aaUGGCCugAGCUGGUCCuu--------GCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 43006 0.68 0.552909
Target:  5'- aUGCCGGugUCGACCgccuugcccgacAGGAuguccugguacGCGucccaguccuucucGGCCa -3'
miRNA:   3'- aAUGGCCugAGCUGG------------UCCU-----------UGC--------------UCGG- -5'
18574 5' -55.4 NC_004682.1 + 38524 0.68 0.567021
Target:  5'- -gAUCGGGCUCuGCCGcagcaGAGCGAGCg -3'
miRNA:   3'- aaUGGCCUGAGcUGGUc----CUUGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 30774 0.68 0.577938
Target:  5'- aUGCCGGugaUCGACau---GCGAGCCg -3'
miRNA:   3'- aAUGGCCug-AGCUGguccuUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 30113 0.68 0.577938
Target:  5'- -cACCGGacccaucuGCUCGGCCAucaGGCGAGCg -3'
miRNA:   3'- aaUGGCC--------UGAGCUGGUcc-UUGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 24634 0.68 0.587802
Target:  5'- ---aCGGGCUCcgguGCCAGGAugucgagGCGuGCCg -3'
miRNA:   3'- aaugGCCUGAGc---UGGUCCU-------UGCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.