miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18574 5' -55.4 NC_004682.1 + 128 0.75 0.216629
Target:  5'- ---aUGGGCUCGACCGccGGcACGGGCCg -3'
miRNA:   3'- aaugGCCUGAGCUGGU--CCuUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 418 0.66 0.65512
Target:  5'- --uUCGGGCUUGACagagaaCGGGAAUGGGUg -3'
miRNA:   3'- aauGGCCUGAGCUG------GUCCUUGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 996 0.66 0.688075
Target:  5'- -aACCGcAUUCGugCGGGGaccacgugACGAGCg -3'
miRNA:   3'- aaUGGCcUGAGCugGUCCU--------UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 4445 0.69 0.523961
Target:  5'- cUACCGGGg-CGACaAGGAGCGcGCUg -3'
miRNA:   3'- aAUGGCCUgaGCUGgUCCUUGCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 5120 0.67 0.610925
Target:  5'- -cACCuGGCaggagaucuucgUCGGCgAGGAGgGAGCCg -3'
miRNA:   3'- aaUGGcCUG------------AGCUGgUCCUUgCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 5960 0.68 0.5889
Target:  5'- -gGCUGGccaagUUCGGCCAGGAguacuGCaGGGCCu -3'
miRNA:   3'- aaUGGCCu----GAGCUGGUCCU-----UG-CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 7914 0.69 0.481187
Target:  5'- -gACCGucCUCGACUucaucggGGGGccgGCGGGCCa -3'
miRNA:   3'- aaUGGCcuGAGCUGG-------UCCU---UGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 9599 0.69 0.48221
Target:  5'- --uCCGGGCUCGACUAcgcGGAGCuuGAGUUc -3'
miRNA:   3'- aauGGCCUGAGCUGGU---CCUUG--CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 9893 0.67 0.62197
Target:  5'- cUACCGGAUggagUCGAUCuGGcGCGAuCCg -3'
miRNA:   3'- aAUGGCCUG----AGCUGGuCCuUGCUcGG- -5'
18574 5' -55.4 NC_004682.1 + 10601 0.67 0.633024
Target:  5'- -cACUGGGCaUUGACCAGGccguguuCGucGGCCa -3'
miRNA:   3'- aaUGGCCUG-AGCUGGUCCuu-----GC--UCGG- -5'
18574 5' -55.4 NC_004682.1 + 12457 0.76 0.189486
Target:  5'- gUACCGGGaagucuucaucCUCGcggaCGGGGACGAGCCg -3'
miRNA:   3'- aAUGGCCU-----------GAGCug--GUCCUUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 12570 0.66 0.709793
Target:  5'- -aGCU-GAC-CGACCAGGucGCGGGCa -3'
miRNA:   3'- aaUGGcCUGaGCUGGUCCu-UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 19717 0.69 0.48221
Target:  5'- cUGCCuGGCUCcACCgAGGAGCccgcuGAGCCg -3'
miRNA:   3'- aAUGGcCUGAGcUGG-UCCUUG-----CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 20938 0.67 0.599899
Target:  5'- -cGCCGGAUcggcgcguUCGGCaggucuggCGGGAGCGGGUg -3'
miRNA:   3'- aaUGGCCUG--------AGCUG--------GUCCUUGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 21667 0.66 0.666141
Target:  5'- -cGCU-GACUaCGACCGGGAuucgcGCGAGUg -3'
miRNA:   3'- aaUGGcCUGA-GCUGGUCCU-----UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 21829 0.67 0.599899
Target:  5'- cUGCUGGA---GACCAGcGAgACGGGCCu -3'
miRNA:   3'- aAUGGCCUgagCUGGUC-CU-UGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 22073 0.66 0.698967
Target:  5'- --cCCGGACacCGugUucguGGAGCGGGUCu -3'
miRNA:   3'- aauGGCCUGa-GCugGu---CCUUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 24537 0.69 0.502897
Target:  5'- aUGCuCGGGgUCGGCCAcugcGGGGCcugugGAGCCu -3'
miRNA:   3'- aAUG-GCCUgAGCUGGU----CCUUG-----CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 24634 0.68 0.587802
Target:  5'- ---aCGGGCUCcgguGCCAGGAugucgagGCGuGCCg -3'
miRNA:   3'- aaugGCCUGAGc---UGGUCCU-------UGCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 25062 0.66 0.654017
Target:  5'- -aGCCGGACcccgaggucCGAcuguucacaCCAGGGgagauccccgaagGCGAGCCg -3'
miRNA:   3'- aaUGGCCUGa--------GCU---------GGUCCU-------------UGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.