miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18574 5' -55.4 NC_004682.1 + 128 0.75 0.216629
Target:  5'- ---aUGGGCUCGACCGccGGcACGGGCCg -3'
miRNA:   3'- aaugGCCUGAGCUGGU--CCuUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 43449 0.67 0.644078
Target:  5'- aUGCCguaGGuCUCGGCCAGGGcaACGcuguagacGCCa -3'
miRNA:   3'- aAUGG---CCuGAGCUGGUCCU--UGCu-------CGG- -5'
18574 5' -55.4 NC_004682.1 + 37466 0.66 0.666141
Target:  5'- --cCCGGACcUGAuCCAGGAACugcuuGCCc -3'
miRNA:   3'- aauGGCCUGaGCU-GGUCCUUGcu---CGG- -5'
18574 5' -55.4 NC_004682.1 + 46605 0.66 0.67713
Target:  5'- -aGCgGGACgcacguucUCGACCAGGcgcagcaucuGCGGGCg -3'
miRNA:   3'- aaUGgCCUG--------AGCUGGUCCu---------UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 32928 0.66 0.688075
Target:  5'- gUGCCGGgacgcuccaGCUCGGUCAGGAcCGA-CCg -3'
miRNA:   3'- aAUGGCC---------UGAGCUGGUCCUuGCUcGG- -5'
18574 5' -55.4 NC_004682.1 + 43488 0.66 0.688075
Target:  5'- -aGCUGGAagUCGucACCGGGggUGuuGCCg -3'
miRNA:   3'- aaUGGCCUg-AGC--UGGUCCuuGCu-CGG- -5'
18574 5' -55.4 NC_004682.1 + 22073 0.66 0.698967
Target:  5'- --cCCGGACacCGugUucguGGAGCGGGUCu -3'
miRNA:   3'- aauGGCCUGa-GCugGu---CCUUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 12570 0.66 0.709793
Target:  5'- -aGCU-GAC-CGACCAGGucGCGGGCa -3'
miRNA:   3'- aaUGGcCUGaGCUGGUCCu-UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 29089 0.66 0.709793
Target:  5'- cUGCCGGGagaugUCGGCgGGGucggcuuCGAGCUu -3'
miRNA:   3'- aAUGGCCUg----AGCUGgUCCuu-----GCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 48200 0.67 0.633024
Target:  5'- --uCUGGucccauguCUCGACCAGGAcGCcGGCCu -3'
miRNA:   3'- aauGGCCu-------GAGCUGGUCCU-UGcUCGG- -5'
18574 5' -55.4 NC_004682.1 + 9893 0.67 0.62197
Target:  5'- cUACCGGAUggagUCGAUCuGGcGCGAuCCg -3'
miRNA:   3'- aAUGGCCUG----AGCUGGuCCuUGCUcGG- -5'
18574 5' -55.4 NC_004682.1 + 42473 0.67 0.62197
Target:  5'- -gGCCGGGgUCGGCCucccuGCG-GCCa -3'
miRNA:   3'- aaUGGCCUgAGCUGGuccu-UGCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 19717 0.69 0.48221
Target:  5'- cUGCCuGGCUCcACCgAGGAGCccgcuGAGCCg -3'
miRNA:   3'- aAUGGcCUGAGcUGG-UCCUUG-----CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 34188 0.69 0.513385
Target:  5'- cUGCC-GACUCcACCAGGGACucaGAGUCc -3'
miRNA:   3'- aAUGGcCUGAGcUGGUCCUUG---CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 38524 0.68 0.567021
Target:  5'- -gAUCGGGCUCuGCCGcagcaGAGCGAGCg -3'
miRNA:   3'- aaUGGCCUGAGcUGGUc----CUUGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 30113 0.68 0.577938
Target:  5'- -cACCGGacccaucuGCUCGGCCAucaGGCGAGCg -3'
miRNA:   3'- aaUGGCC--------UGAGCUGGUcc-UUGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 30774 0.68 0.577938
Target:  5'- aUGCCGGugaUCGACau---GCGAGCCg -3'
miRNA:   3'- aAUGGCCug-AGCUGguccuUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 24634 0.68 0.587802
Target:  5'- ---aCGGGCUCcgguGCCAGGAugucgagGCGuGCCg -3'
miRNA:   3'- aaugGCCUGAGc---UGGUCCU-------UGCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 5960 0.68 0.5889
Target:  5'- -gGCUGGccaagUUCGGCCAGGAguacuGCaGGGCCu -3'
miRNA:   3'- aaUGGCCu----GAGCUGGUCCU-----UG-CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 21829 0.67 0.599899
Target:  5'- cUGCUGGA---GACCAGcGAgACGGGCCu -3'
miRNA:   3'- aAUGGCCUgagCUGGUC-CU-UGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.