miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18580 3' -62.7 NC_004682.1 + 32639 0.66 0.341651
Target:  5'- -aGCGCCauGCGCGGUGGuuGCcggugacgaccAUCGGUg -3'
miRNA:   3'- gaCGCGG--UGCGCCGCUggCG-----------UGGCUA- -5'
18580 3' -62.7 NC_004682.1 + 26999 0.66 0.341651
Target:  5'- aUGUGCUugGUcaggucGGUGACCGCAUUGc- -3'
miRNA:   3'- gACGCGGugCG------CCGCUGGCGUGGCua -5'
18580 3' -62.7 NC_004682.1 + 46130 0.66 0.341651
Target:  5'- -cGCGUCggcaGCGcCGaGCGACagcaGCACCGAg -3'
miRNA:   3'- gaCGCGG----UGC-GC-CGCUGg---CGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 27546 0.66 0.341651
Target:  5'- -aGuCGCUACgGCGGCGACacuggCGCugCGGc -3'
miRNA:   3'- gaC-GCGGUG-CGCCGCUG-----GCGugGCUa -5'
18580 3' -62.7 NC_004682.1 + 42181 0.66 0.333791
Target:  5'- -cGCGCCgaACGCGaG-GACCGCGCaGAc -3'
miRNA:   3'- gaCGCGG--UGCGC-CgCUGGCGUGgCUa -5'
18580 3' -62.7 NC_004682.1 + 49902 0.66 0.318471
Target:  5'- -gGUGCCGaugGCGGUGACCuucucgguggGCACCGc- -3'
miRNA:   3'- gaCGCGGUg--CGCCGCUGG----------CGUGGCua -5'
18580 3' -62.7 NC_004682.1 + 28698 0.66 0.31847
Target:  5'- aUGcCGCCcacuCGCGGCGGCgGCGggaCGAa -3'
miRNA:   3'- gAC-GCGGu---GCGCCGCUGgCGUg--GCUa -5'
18580 3' -62.7 NC_004682.1 + 20199 0.66 0.311011
Target:  5'- cCUG-GCCGCGCugucgGGCGACCGgA-CGAUg -3'
miRNA:   3'- -GACgCGGUGCG-----CCGCUGGCgUgGCUA- -5'
18580 3' -62.7 NC_004682.1 + 14916 0.66 0.303685
Target:  5'- gCUGCGa---GCGGCGACCcgACCGAg -3'
miRNA:   3'- -GACGCggugCGCCGCUGGcgUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 36139 0.66 0.303685
Target:  5'- aUGuCGCCACGCGaCGugUG-GCCGAUg -3'
miRNA:   3'- gAC-GCGGUGCGCcGCugGCgUGGCUA- -5'
18580 3' -62.7 NC_004682.1 + 47621 0.66 0.303685
Target:  5'- cCUGUGCCGCGCcgccgacguaGGUGauGCCGUugUGGa -3'
miRNA:   3'- -GACGCGGUGCG----------CCGC--UGGCGugGCUa -5'
18580 3' -62.7 NC_004682.1 + 7698 0.67 0.289433
Target:  5'- --cCGCCuggaccggaGCGUGGCGGCUGCcgACCGAc -3'
miRNA:   3'- gacGCGG---------UGCGCCGCUGGCG--UGGCUa -5'
18580 3' -62.7 NC_004682.1 + 2957 0.67 0.289432
Target:  5'- uCUGgGgCGCG-GGCGGCgGCGCUGGg -3'
miRNA:   3'- -GACgCgGUGCgCCGCUGgCGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 6274 0.67 0.289432
Target:  5'- uCUGgGCCugGaGGCGGCgaaGCGCUGGc -3'
miRNA:   3'- -GACgCGGugCgCCGCUGg--CGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 16320 0.67 0.289432
Target:  5'- cCUGCuCCGCGaCGGCaugaaggacuggGGCCGCGCCc-- -3'
miRNA:   3'- -GACGcGGUGC-GCCG------------CUGGCGUGGcua -5'
18580 3' -62.7 NC_004682.1 + 50347 0.67 0.275711
Target:  5'- -gGCGgCGCGuCGGUGAgCGCcGCCGGa -3'
miRNA:   3'- gaCGCgGUGC-GCCGCUgGCG-UGGCUa -5'
18580 3' -62.7 NC_004682.1 + 6145 0.67 0.27571
Target:  5'- -gGCG-UACGaCGGCgGGCCGCugCGAg -3'
miRNA:   3'- gaCGCgGUGC-GCCG-CUGGCGugGCUa -5'
18580 3' -62.7 NC_004682.1 + 45517 0.67 0.27571
Target:  5'- gUGCGCCGCacuGCGGUguucacaaguugGACCcgccuGCGCCGGg -3'
miRNA:   3'- gACGCGGUG---CGCCG------------CUGG-----CGUGGCUa -5'
18580 3' -62.7 NC_004682.1 + 15091 0.67 0.269047
Target:  5'- -aGCGCUAUcaccucccCGGUGAgCGCGCCGAUc -3'
miRNA:   3'- gaCGCGGUGc-------GCCGCUgGCGUGGCUA- -5'
18580 3' -62.7 NC_004682.1 + 16060 0.67 0.25611
Target:  5'- cCUGgGCCACgucaaccugGCGGCGuuCGCGCaCGGc -3'
miRNA:   3'- -GACgCGGUG---------CGCCGCugGCGUG-GCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.