miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18591 5' -50.4 NC_004682.1 + 43100 0.66 0.93073
Target:  5'- aGAUCGCCagGCGAcgggCACCGggGAucuuGGUCAg -3'
miRNA:   3'- -CUAGCGG--CGCUa---GUGGUagCU----UUAGU- -5'
18591 5' -50.4 NC_004682.1 + 38078 0.66 0.924822
Target:  5'- cGGUCaCCGCGAccucaacgagaUCGCCGUUGggGa-- -3'
miRNA:   3'- -CUAGcGGCGCU-----------AGUGGUAGCuuUagu -5'
18591 5' -50.4 NC_004682.1 + 49668 0.66 0.905307
Target:  5'- ---gGCgGCGGUCACCcUCGGAGa-- -3'
miRNA:   3'- cuagCGgCGCUAGUGGuAGCUUUagu -5'
18591 5' -50.4 NC_004682.1 + 35163 0.67 0.890826
Target:  5'- cAUCGCCGCGA-UACCggUGAGcuGUCc -3'
miRNA:   3'- cUAGCGGCGCUaGUGGuaGCUU--UAGu -5'
18591 5' -50.4 NC_004682.1 + 48882 0.68 0.857637
Target:  5'- aGAcCGCCaGCGAUCcagauccGCCAUCGggGa-- -3'
miRNA:   3'- -CUaGCGG-CGCUAG-------UGGUAGCuuUagu -5'
18591 5' -50.4 NC_004682.1 + 26227 0.68 0.849758
Target:  5'- --cCGUgGCGuUCGCCggGUCGGAGUCGg -3'
miRNA:   3'- cuaGCGgCGCuAGUGG--UAGCUUUAGU- -5'
18591 5' -50.4 NC_004682.1 + 4631 0.68 0.840769
Target:  5'- -cUCGCUGCcgaGAUCgagGCCAUCGAGAa-- -3'
miRNA:   3'- cuAGCGGCG---CUAG---UGGUAGCUUUagu -5'
18591 5' -50.4 NC_004682.1 + 32439 0.68 0.840769
Target:  5'- -uUCGCCGUGAacgugaACCAUCGGGccGUCc -3'
miRNA:   3'- cuAGCGGCGCUag----UGGUAGCUU--UAGu -5'
18591 5' -50.4 NC_004682.1 + 47410 0.68 0.831542
Target:  5'- gGAUCGCCGgG---GCCGUCGAAccUCAg -3'
miRNA:   3'- -CUAGCGGCgCuagUGGUAGCUUu-AGU- -5'
18591 5' -50.4 NC_004682.1 + 31211 0.68 0.831542
Target:  5'- aGAUC-CUGCGAgaccgccggCACCAgCGGGAUCAg -3'
miRNA:   3'- -CUAGcGGCGCUa--------GUGGUaGCUUUAGU- -5'
18591 5' -50.4 NC_004682.1 + 35740 0.68 0.822088
Target:  5'- aGAUCGgCGCGcUCACCGggGAGGUg- -3'
miRNA:   3'- -CUAGCgGCGCuAGUGGUagCUUUAgu -5'
18591 5' -50.4 NC_004682.1 + 40348 0.69 0.812418
Target:  5'- cGUCGagCGCGGUCACCG-CGAAGccUCGc -3'
miRNA:   3'- cUAGCg-GCGCUAGUGGUaGCUUU--AGU- -5'
18591 5' -50.4 NC_004682.1 + 37867 0.69 0.812418
Target:  5'- gGAUgCGCCGCuuGAUCAuCCGcUCGAcAUCAg -3'
miRNA:   3'- -CUA-GCGGCG--CUAGU-GGU-AGCUuUAGU- -5'
18591 5' -50.4 NC_004682.1 + 39604 0.7 0.761234
Target:  5'- -uUCGUCGUGGUCAUCGUCacuccAGGUCAa -3'
miRNA:   3'- cuAGCGGCGCUAGUGGUAGc----UUUAGU- -5'
18591 5' -50.4 NC_004682.1 + 19940 0.7 0.761234
Target:  5'- -cUCGCCgagGCGAUCACCGagCGAAGa-- -3'
miRNA:   3'- cuAGCGG---CGCUAGUGGUa-GCUUUagu -5'
18591 5' -50.4 NC_004682.1 + 30679 0.7 0.761234
Target:  5'- --gUGuuGgGAUCGCCAUCGcuGUCGg -3'
miRNA:   3'- cuaGCggCgCUAGUGGUAGCuuUAGU- -5'
18591 5' -50.4 NC_004682.1 + 19271 0.7 0.739669
Target:  5'- -uUCGgCGCGAcaUCACCuuugguGUCGAGAUCc -3'
miRNA:   3'- cuAGCgGCGCU--AGUGG------UAGCUUUAGu -5'
18591 5' -50.4 NC_004682.1 + 37891 0.7 0.739669
Target:  5'- --gCGCCGCGAUguCCG-CGAAGUUc -3'
miRNA:   3'- cuaGCGGCGCUAguGGUaGCUUUAGu -5'
18591 5' -50.4 NC_004682.1 + 23071 0.7 0.733103
Target:  5'- uGGUCGCCuacGCGAUCcugacgauccccgcaACCAUCGGugcGGUCGc -3'
miRNA:   3'- -CUAGCGG---CGCUAG---------------UGGUAGCU---UUAGU- -5'
18591 5' -50.4 NC_004682.1 + 12336 0.71 0.695232
Target:  5'- cGAUCaUCGCGAUCACCGaagggGAGAUCGa -3'
miRNA:   3'- -CUAGcGGCGCUAGUGGUag---CUUUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.